spots
 
Ares lab Yeast Intron Database
Version 3.0
Created and maintained by Leslie Grate, Angela Telerski, Tyson Clark, Ross Centers and Manny Ares

Departments of Molecular, Cell & Developmental Biology and Computer Science in the Division of Natural Sciences and the Jack Baskin School of Engineering, University of California, Santa Cruz, CA  95064
Supported by the W. M. Keck Foundation, the Packard Foundation, and the National Institutes of Health.
Yeast Spliceosomal Introns

Intron Table

Extras

Links

Update History

Acknowledgments



University of California, 
Santa Cruz

Ares Lab Home

MCD Graduate Program

RNA Center

Computational Biology

Center for Biomolecular Engineering

Microarray Facility


Search the Database

These links allow you to create smaller tables that extract a desired subset of introns based on information in the database:
 

The Intron Table Text Query allows searches for entries that have a text word in the description field of the database entries, e.g. "ubiquitin", and generates a table containing only those entries that match.
 

The Intron Splice Signals Query allows identification of introns with specified splicing signals, for example, all introns with GUACGU 5' splice sites can be listed, with links to SGD. 
 

The YAG Query allows analysis of the number of potential 3' splice sites between the branchpoint and the annotated 3' splice site. 
 

The Sequence search on Introns allows pattern searching of the intron sequence database and reports which introns have a specified sequence how many times and where.

     
     

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 


Page last updated July 5, 2002

This RNA webring site owned by Manny Ares.
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