Ares Lab Yeast Intron Database

Ares lab Yeast Intron Database Version 3.0
Created and maintained by Leslie Grate, Angela Telerski, Tyson Clark, Ross Centers and Manny Ares

Departments of Molecular, Cell & Developmental Biology and Computer Science in the Division of Natural Sciences and the Jack Baskin School of Engineering, University of California, Santa Cruz, CA 95064

Supported by the W. M. Keck Foundation, the Packard Foundation, and the National Institutes of Health.

Yeast Spliceosomal Introns

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Carrie's New introns (as of YK2)

Note: This table is equivalent to Table 1 of Davis et al. 2000 and describes features of new introns identified and confirmed in that work.

ORF	Function	5' SS	branchpoint	3' SS	length	comments
YBR186W	meiotic checkpoint	GUAUGU	CACUAAC	UAG	113	rare bp
YDL115C	unknown	GUAUGU	GACUAAC	AAG	89	rare bp, 3'ss
YGR001C-(1)	unknown	GUAAGU	UACUAAC	UAG	62	rare 5' ss
YGR225W	CDC20-like	GUACGU	UACUAAC	CAG	93	Mer1-activated
YLR093C	v-SNARE	GUAUGU	GACUAAC	UAG	141	rare bp
YLR211C	unknown	GUAAGU	GACUAAC	UAG	59	rare 5'ss, bp
YML034W-(1)	unknown	GUGAGU	UACUAAC	UAG	126	novel alternative 5'ss
YML034W-(2)	unknown	GCAAGU	UACUAAC	UAG	130	novel alternative 5'ss
YNL012W	Phospholipase	GUAAGU	AACUAAC	UAG	84	rare 5'ss, bp

Note: Most of these introns are not yet annotated at SGD or YPD.