Ares Lab Yeast Intron Database

Ares lab Yeast Intron Database Version 3.0
Created and maintained by Leslie Grate, Angela Telerski, Tyson Clark, Ross Centers and Manny Ares

Departments of Molecular, Cell & Developmental Biology and Computer Science in the Division of Natural Sciences and the Jack Baskin School of Engineering, University of California, Santa Cruz, CA 95064

Supported by the W. M. Keck Foundation, the Packard Foundation, and the National Institutes of Health.

Yeast Spliceosomal Introns

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Intron Table

Stuff you won't find elsewhere...

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Acknowledgments

University of California,
Santa Cruz

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Microarray Facility

New intron predictions that failed to splice

(tested using PCR primers specified in the Primers Table.)

ORF NAME/FUNCTION 5' SPLICE SITE BRANCH POINT 3' SPLICE SITE BASE PAIRS

YBR057C MUM2 GUAUGU UAUUAAC CAG 173

YDR318W MCM21 GUAUGU CACUAAC AAG 111

YEL003W GIM4 GUAUGU,GUAAGU,GUAUGC UACUAAC UAG

YHR039C UNKNOWN GUAUGU CACUAAC CAG

YHR124W NDT80 GUAUGA UACUAAC AAG <247

YKL133C UNKNOWN GUAUGU CACUAAC AAG

YML031W NDC1 GUAUGC,GUAUGU CACUAAC CAG 340,263

YNL049C UNKNOWN GUAUGC GGCUAAC CAG,UAG

YOR180 ECI2 GUAUGA GACUAAC AAG

YOR195 SLK9 GUAUGA UACUAAC CAG 459

YPL208 unknown GUACGU,GUACGU UACUAAC CAG

The above genes were identified by Carrie Davis as containing intron-like sequences. Tests of intron splicing by RT-PCR were negative for these genes using the primer pairs indicated in the Primers Table.