This page describes work on finding SECIS elements in HIV type 1, as published in the Journal of AIDS and Human Retrovirology (JAIDS) 1998 April, 15;17(5):398-403. The full raw data, sequences used and other links are here.

Data for JAIDS article

• All 923 raw RNABOB hits.
• The raw RNABOB data reduce to 170 hits based on exact 5' and 3' location.
• HIV-1 sequence used in this work, from Entrez.

Computational Biology

• Computational Biology at UCSC
• Sequence Alignment and Modeling System (SAM)
• Entrez Nucleotide Database Search

University of California at Santa Cruz

• Computer Engineering and Information Science
• UCSC Home Page