From farmer@cse.ucsc.edu  Tue Jul 20 11:20:35 1999
Return-Path: <farmer@cse.ucsc.edu>
Date: Tue, 20 Jul 1999 11:20:34 -0700
From: UCSC Computational Biology <farmer@cse.ucsc.edu>
Subject: T98 Alignment
Apparently-To: karplus@cse.ucsc.edu

>2crd
_1:37, 37 bases, E549705D checksum.
XFTNVSCTTSKECWSVCQRLHNTSRGKCMNKKCRCYS
>2crd
_1:37, 37 bases, E549705D checksum.
XFTNVSCTTSKECWSVCQRLHNTSRGKCMNKKCRCYS
>gi|283595|pir||A42040_2:37, 38 bases, D125FF1C checksum.
gVEINVKCSGSPQCLKPCKDA-GMRFGKCMNRKCHCTP
>gi|265413|bbs|125130_25:49, 47 bases, F75D5C57 checksum.
gdndy------------CLRECRQQYGKSGGYCYAFACWCTHlyeqa
>gi|730727|sp|P40755|SCKM_CENMA_1:38, 39 bases, 20633DB checksum.
TIINVKCTSPKQCLPPCKAQFGQSAGaKCMNGKCKCYPh
>gi|135782|sp|P20158|THG1_WHEAT_14:43, 48 bases, 8D71A0C5 checksum.
gfkgp------CMSNKNCAQVCQQE-GWGGGNCDGpfRRCKC--irqc
>gi|135793|sp|P20230|THG_HORVU_14:44, 47 bases, 6F5D771F checksum.
gfkgp------CVSNKNCAQVCMQE-GWGGGNCDGplRRCKCM-rrc
>gi|443369|pdb|2CRD|_1:37, 37 bases, E549705D checksum.
XFTNVSCTTSKECWSVCQRLHNTSRGKCMNKKCRCYS
>gi|464740|sp|P13487|SCKC_LEIQH_1:37, 37 bases, B91FCA3C checksum.
QFTNVSCTTSKECWSVCQRLHNTSRGKCMNKKCRCYS
>gi|1173379|sp|P45628|SCK2_LEIQH_1:37, 37 bases, 30C5C734 checksum.
QFTQESCTASNQCWSICKRLHNTNRGKCMNKKCRCYS
>gi|423890|pir||S32792_1:37, 37 bases, 2A5C1ADF checksum.
EFTDVDCSVSKECWSVCKDLFGVDRGKCMGKKCRCYQ
>gi|134298|sp|P08816|SCK2_TITSE_1:30, 37 bases, 861E0532 checksum.
VFINVKCRGSPECLPKCKEAIGKAAGKCVN-------
>gi|464741|sp|P24663|SCKI_MESTA_1:37, 37 bases, 263310DD checksum.
QFTDVDCSVSKECWSVCKDLFGVDRGKCMGKKCRCYQ
>gi|134350|sp|P08900|SCX2_CENSU_25:50, 48 bases, D657C52E checksum.
gdndy------------CLRECKQQYGKSSGgYCYAFACWCTHlyeqa
>gi|208161_9:45, 42 bases, 438AA3B1 checksum.
siegrQFTNVSCTTSKECWSVCQRLHNTSRGKCMNKKCRCYS
>gi|223745|prf||0909208A_1:37, 40 bases, 91B582A1 checksum.
TIINVKCTSPKQCSKPCKELYGSSAGaKCMNGKCKCY-bn
>gi|676882|dbj|BAA06149|_45:80, 50 bases, 2FE0D101 checksum.
tfsgy------CFISEHCDEECKEKEGAKRGMCIKksifrRYCYCYHkck
>gi|1173373|sp|P46111|SCA2_LEIQH_2:37, 39 bases, 68ECD191 checksum.
gVPINVSCTGSPQCIKPCKDA-GMRFGKCMNRKCHCTPk
>gi|730726|sp|P24662|SCK1_ANDMA_2:37, 39 bases, 27DC0E25 checksum.
gVEINVKCSGSPQCLKPCKDA-GMRFGKCMNRKCHCTPk
>gi|730728|sp|P08815|SCKN_CENNO_1:38, 39 bases, AEC9A256 checksum.
TIINVKCTSPKQCSKPCKELTGSSAGaKCMNGKCKCYNn
>gi|786430|bbs|159192_1:32, 37 bases, 384948D7 checksum.
-----SCTASNQCWSICKRLHNTNRGKCMNKKCRCYS
>gi|1173380|sp|P45660|SCK3_LEIQH_1:36, 37 bases, 4F81849F checksum.
GLIDVRCYDSRQCWIACKKVTGSTQGKCQNKQCRCY-
>gi|1173377|sp|P45696|SCK2_ANDMA_23:58, 43 bases, 6905D89 checksum.
iginaVRIPVSCKHSGQCLKPCKDA-GMRFGKCMNGKCDCTPk
>gi|913993|bbs|162856_1:38, 38 bases, 8333533C checksum.
ITINVKCTSPQQCLRPCKDRFGQHAGKgCINGKCKCYP
>gi|1173378|sp|P45630|SCK2_CENLL_1:36, 38 bases, 3A01B8F3 checksum.
TVIDVKCTSPKQCLPPCKEIYGRHAGaKCMNGKCKC--
>gi|1173376|sp|P45629|SCK1_CENLL_1:38, 38 bases, 8C238C7A checksum.
ITINVKCTSPQQCLRPCKDRFGQHAGgKCINGKCKCYP
>gi|1171503|emb|CAA64653|_41:70, 47 bases, 6ABEE3C2 checksum.
nfkgl------CLSSRDCGNVCRRE-GFTDGSCIGFRLQCFCtkpca
>gi|1173372|sp|P46110|SCA1_LEIQH_2:37, 39 bases, BE44163A checksum.
gVPINVKCTGSPQCLKPCKDA-GMRFGKCINGKCHCTPk
>gi|1173374|sp|P46112|SCA3_LEIQH_2:37, 39 bases, 33FB6084 checksum.
gVPINVPCTGSPQCIKPCKDA-GMRFGKCMNRKCHCTPk
>gi|1173382|sp|P46114|SCKA_TITSE_1:37, 37 bases, 1F17E1B3 checksum.
VFINAKCRGSPECLPKCKEAIGKAAGKCMNGKCKCYP
>gi|1200228|emb|CAA65045|_41:70, 47 bases, 7C4E2EA3 checksum.
nfkgl------CLSSRDCGNVCRRE-GFTSGVCRGFPLKCFCrkpga
>gi|1209258_44:73, 46 bases, FDCB9F9B checksum.
rfkgt------CVSSTNCGNVCHNE-GFGGGKCRGFRVRCYCtrhc
>gi|1360108|emb|CAA62761|_47:78, 51 bases, 2002635C checksum.
kfkgv------CASSNNCKNVCQTE-GFPSGSCDfhvaNRKCYC--skpc
p
>gi|1310779|pdb|1SXM|_1:38, 40 bases, 83450D85 checksum.
TIINVKCTSPKQCSKPCKELYGSSAGaKCMNGKCKCYNnx
>gi|2833496|sp|Q57619|FER8_METJA_7:44, 48 bases, 5B20E35D checksum.
npkiiVLNPEKCTKCYDCINICKEIHGESRVrKVDGIPIFCMQcenap
>gi|1706355|sp|P80571|DEFI_MYTGA_4:36, 45 bases, 117CA3A0 checksum.
gfg------CPNNYQCHRHCKSIPGRCGGYCGGxhrLRCTCY-rc
>gi|1710879|sp|Q10726|SCKG_PANIM_2:34, 39 bases, 1842B8E5 checksum.
l----VKCRGTSDCGRPCQQQTGCPNSKCINRMCKCYGc
>gi|1711348|sp|P80670|SCX2_LEIQH_1:28, 38 bases, C31EB81A checksum.
----VSC---EDCPDHCSTQ--KARAKCDNDKCVCEPi
>gi|1711349|sp|P80671|SCX3_LEIQH_1:28, 38 bases, 2D10D936 checksum.
----VSC---EDCPDHCSTQ--KARAKCDNDKCVCEPk
>gi|1781281|emb|CAA71482|_38:71, 47 bases, 1A3D3861 checksum.
rnfksACIAVSgdn----EECDHDCRRVGGWYGGSCKNQKCVC--dc
>gi|1827925|pdb|1CMR|_1:31, 37 bases, F7992C1B checksum.
------CTTSKECWSVCQRLHNTSKGWCDHRGCICES
>gi|3024595|sp|P56215|SCX1_ANDMA_1:28, 38 bases, 3E5AF8E6 checksum.
----VSC---EDCPEHCSTQ--KAQAKCDNDKCVCEPi
>gi|1911793|bbs|180148_1:37, 38 bases, A8482EBC checksum.
TIINEKCFATSQCWTPCKKAIGSLQSKCMNGKCKCYNg
>gi|1945406_14:46, 43 bases, DBF9A08 checksum.
dddkt----ISCTNPKQCYPHCKKETGYPNAKCMNRKCKCFGr
>gi|2500704|sp|P55896|SCK1_ORTSC_2:37, 39 bases, 94C3B1F7 checksum.
gVIINVKCKISRQCLEPCKKA-GMRFGKCMNGKCHCTPk
>gi|1942694|pdb|1BAH|_1:37, 37 bases, B388D444 checksum.
XFTNVSCTTSKEXWSVCQRLHNTSRGKCMNKKXRCYS
>gi|3287862|sp|O22867|ITI5_ARATH_55:77, 47 bases, F60A8EFF checksum.
iypsl------------CYRNCRFYKGAKGGKCDGLKCFC--dfcsd
>gi|3024587|sp|P56219|SCKK_TITSE_1:35, 37 bases, AA2D984B checksum.
VVIGQRCYRSPDCYSACKKLVGKATGKCTNGRCDC--
>gi|2392585|pdb|1TXM|_1:33, 39 bases, 3F8FA820 checksum.
----VSCTGSKDCYAPCRKQTGCPNAKCINKSCKCYGcx
>gi|2500705|sp|P55927|SCKA_PANIM_2:34, 39 bases, 4118DC46 checksum.
t----ISCTNPKQCYPHCKKETGYPNAKCMNRKCKCFGr
>gi|2500706|sp|P55928|SCKB_PANIM_2:34, 39 bases, F3B9EAB6 checksum.
t----ISCTNEKQCYPHCKKETGYPNAKCMNRKCKCFGr
>gi|2500708|sp|P80719|SCXM_SCOMA_1:33, 38 bases, 35C48DD8 checksum.
----VSCTGSKDCYAPCRKQTGCPNAKCINKSCKCYGc
>gi|2959750|emb|CAA12073|_36:59, 45 bases, E0008BA4 checksum.
cvyrt------------CDKDCKRR-GYRSGKCINNACKCYPygk
>gi|3318838|pdb|1LIR|_1:37, 37 bases, 6C937D55 checksum.
XFTQESCTASNQCWSICKRLHNTNRGKCMNKKCRCYS
>gi|3483009|emb|CAA06720|_23:57, 51 bases, 2FDEB5C7 checksum.
rgaacACTNCRCLKS-ECSPNCRKL---ccadSQGKCGNAGCKC--gaac
k
>gi|4038038_42:69, 46 bases, 92756083 checksum.
kfqgv------CLNSQSCAKACPSE-GFSGGRCSSLRCYC--skac
>gi|4389126|pdb|2BMT|_1:37, 37 bases, E8943567 checksum.
XFTNVSCSASSQCWPVCKKLFGTYRGKCMNSKCRCYS
>gi|4389259|pdb|1BKT|_1:36, 39 bases, 3E8B4C46 checksum.
VGINVKCKHSGQCLKPCKDA-GMRFGKCINGKCDCTPkx
>gi|4389290|pdb|1BIG|_1:37, 37 bases, 9A9ED4C8 checksum.
XFTDVKCTGSKQCWPVCKQMFGKPNGKCMNGKCRCYS
>gi|4454157|emb|CAA15423|_17:52, 52 bases, 78BFD8A checksum.
egstcCCTNCRCLKS-ECLPGCKKL---ccadaEKGKCGNAGCKC--gaa
ck