| gene | class | score | Locus Name | GeneProduct |
| YOR290C | -1 | 1.79 | snf2 | transcriptional regulator |
| YNL039W | -1 | 1.67 | TFC5 | 90 kd subunit of TFIIIB, also called TFIIIB90 or B'' or B''90 component |
| YJL088W | -1 | 1.65 | arg3 | Ornithine carbamoyltransferase |
| YGR041W | -1 | 1.51 | BUD9 | |
| YLR384C | -1 | 1.4 | IKI3 | |
| YLL021W | -1 | 1.28 | spa2 | spindle pole antigen |
| YKL020C | -1 | 1.25 | SPT23 | |
| YHR084W | 1 | 1.12 | ste12 | Transcription factor |
| YBR023C | -1 | 1.12 | chs3 | chitin synthase 3 |
| YPL179W | -1 | 1.11 | PPQ1 | protein phosphatase Q |
| YGL112C | -1 | 0.981 | TAF60 | TATA-binding protein-associated-factor |
| YAL021C | -1 | 0.944 | ccr4 | 95 kDa containng leucine rich tandem repeats |
| YDR405W | -1 | 0.875 | MRP20 | 263-amino acid mitochondrial ribosomal large subunit protein\; similar to L23 family of ribosomal proteins |
| YDR143C | -1 | 0.849 | san1 | (putative) transcriptional regulator |
| YLR092W | -1 | 0.839 | SUL2 | high affinity sulfate permease |
| YAL043C | -1 | 0.83 | pta1 | |
| YFL021W | -1 | 0.756 | GAT1 | transcriptional activator with GATA-1-type Zn finger DNA-binding motif |
| YGL207W | -1 | 0.702 | spt16 | transcription factor |
| YER047C | -1 | 0.696 | SAP1 | member of the AAA ATPase family of proteins |
| YNL103W | -1 | 0.622 | met4 | member of the leucine zipper family of transcriptional activators |
| YDR192C | -1 | 0.506 | NUP42 | 42-kD protein associated with nuclear pore complexes\; Nup42p is structurally related to the FG-nucleoporin family of pore proteins |
| YDR145W | -1 | 0.503 | TAF61 | TFIID subunit |
| YBL058W | -1 | 0.467 | SHP1 | |
| YLR067C | -1 | 0.452 | PET309 | |
| YPL204W | -1 | 0.446 | HRR25 | casein kinase I isoform |
| YIL046W | -1 | 0.432 | MET30 | Met30p contains five copies of WD40 motif and interacts with and regulates Met4p |
| YHR136C | -1 | 0.426 | SPL2 | 17 kDa protein |
| YOL006C | -1 | 0.421 | top1 | topoisomerase I |
| YBL014C | -1 | 0.386 | RRN6 | member of yeast Pol I core factor (CF) also composed of Rrn11p, Rrn7p and TATA-binding protein |
| YGL254W | -1 | 0.381 | FZF1 | putative transcription factor, has five zinc fingers |
| YJR035W | -1 | 0.374 | RAD26 | DNA-dependent ATPase, homologous to human Cockayne syndrome B gene ERCC6, that is a putative helicase |
| YKL210W | -1 | 0.347 | UBA1 | ubiquitin activating enzyme, similar to Uba2p |
| YNR023W | -1 | 0.343 | SNF12 | 73 kDa subunit of the SWI\/SNF transcription activation complex, homolog of Rsc6p subunit of the RSC chromatin remodeling complex |
| YOR043W | -1 | 0.331 | whi2 | |
| YHR005C | -1 | 0.326 | GPA1 | alpha subunit of G protein coupled to mating factor receptors |
| YBR112C | -1 | 0.321 | cyc8 | |
| YGL237C | -1 | 0.313 | hap2 | transcriptional activator protein of CYC1 |
| YDR234W | -1 | 0.307 | lys4 | homoaconitase |
| YPL254W | -1 | 0.29 | HFI1 | transcription factor, member of Ada\/Gcn5 protein complex |
| YPR104C | 1 | 0.278 | FHL1 | Protein with a domain similar to the fork head DNA-binding domain found in the developmental fork head protein of Drosophila melanogaster and in the HNF-3 family of hepatocyte mammalian transcription factors. |
| YDL080C | -1 | 0.259 | THI3 | alpha-ketoisocaproate carboxylase |
| YGL173C | -1 | 0.256 | KEM1 | DNA strand-transfer protein exoribonuclease I |
| YER161C | -1 | 0.248 | spt2 | non-specific DNA binding protein (sin1) |
| YBR192W | -1 | 0.234 | RIM2 | |
| YLL022C | -1 | 0.153 | HIF1 | |
| YML049C | -1 | 0.151 | rse1 | |
| YMR164C | -1 | 0.133 | MSS11 | Predicted 758 amino acid polypeptide with poly-glutamine and poly-asparagine domains |
| YOL012C | -1 | 0.126 | HTA3 | An evolutionarily conserved member of the histone H2A F\/Z family of histone variants |
| YNL048W | -1 | 0.116 | ALG11 | |
| YPL187W | -1 | 0.108 | mf(alpha)1 | mating factor alpha |
| YER159C | -1 | 0.0927 | BUR6 | Transcriptional regulator which functions in modulating the activity of the general transcription machinery in vivo |
| YDR076W | -1 | 0.0894 | rad55 | RecA homolog (related to DMC1, RAD51, RAD57), interacts with Rad51p and Rad57p by two-hybrid analysis |
| YIL170W | -1 | 0.0778 | HXT12 | hexose permease |
| YOR017W | -1 | 0.0759 | pet127 | Mitochondrial membrane protein |
| YBR279W | -1 | 0.0668 | PAF1 | |
| YJL090C | -1 | 0.0593 | DPB11 | DNA polymerase II complex |
| YFR040W | -1 | 0.0533 | SAP155 | |
| YAL001C | -1 | 0.046 | TFC3 | transcription factor tau (TFIIIC) subunit 138 |
| YKL032C | -1 | 0.0354 | IXR1 | intrastrand crosslink recognition protein |
| YMR182C | -1 | 0.0128 | RGM1 | Putative transcriptional repressor with proline-rich zinc fingers |
| YJL056C | -1 | 0.00769 | ZAP1 | Metalloregulatory protein involved in zinc-responsive transcriptional regulation |
| YOL004W | -1 | 0.00365 | sin3 | DNA binding protein involved in transcriptional regulation |
| YGL013C | -1 | -0.0163 | PDR1 | zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type |
| YAL041W | -1 | -0.029 | cdc24 | Guanine nucleotide exchange factor (a.k.a. GDP-release factor) for cdc42 |
| YKL208W | -1 | -0.0426 | CBT1 | |
| YBR055C | -1 | -0.0474 | prp6 | RNA splicing factor |
| YKR097W | -1 | -0.0483 | pck1 | phosphoenolpyruvate carboxylkinase |
| YNL238W | -1 | -0.0514 | kex2 | Ca2+-dependent serine protease |
| YLR436C | -1 | -0.0733 | ECM30 | |
| YMR246W | -1 | -0.0944 | FAA4 | long-chain fatty acid--CoA ligase and synthetase 4 |
| YOR335C | -1 | -0.104 | ALA1 | Cytoplasmic alanyl-tRNA synthetase gene |
| YKL101W | -1 | -0.122 | HSL1 | Putative protein kinase homologous to S. pombe cdr1\/nim1 |
| YDL106C | 1 | -0.135 | grf10 | Homeobox-domain containing transcription fractor which is a positive regulator of PHO5 and other genes. |
| YCR042C | -1 | -0.143 | TSM1 | TATA binding protein-associated factor (TAF) |
| YBL101C | -1 | -0.147 | ECM21 | |
| YDL127W | -1 | -0.162 | PCL2 | G1 cyclin |
| YDR189W | -1 | -0.163 | SLY1 | |
| YCR066W | -1 | -0.186 | RAD18 | Zn finger protein, putative ATPase |
| YKR072C | -1 | -0.189 | sis2 | sit4 suppressor |
| YEL055C | -1 | -0.189 | POL5 | |
| YOR244W | -1 | -0.209 | ESA1 | Acetyltransferase in the SAS gene family |
| YNL118C | -1 | -0.213 | PSU1 | |
| YIR033W | -1 | -0.217 | MGA2 | |
| YER145C | -1 | -0.227 | FTR1 | Iron permease |
| YGL201C | -1 | -0.233 | MCM6 | |
| YHR164C | -1 | -0.253 | DNA2 | DNA replication helicase |
| YDL140C | -1 | -0.271 | rpo21 | RNA polymerase II large subunit |
| YLR212C | -1 | -0.272 | TUB4 | gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body |
| YFL050C | -1 | -0.283 | ALR2 | (putative) ion transporter |
| YJL187C | -1 | -0.285 | SWE1 | protein kinase homolog |
| YNL329C | -1 | -0.306 | PEX6 | Member of the AAA-protein family that includes NSFp and PEX1p |
| YOL123W | -1 | -0.316 | HRP1 | |
| YJL176C | -1 | -0.328 | SWI3 | transcription factor |
| YHR055C | -1 | -0.333 | CUP1 | copper-binding metallothionein |
| YER040W | -1 | -0.335 | gln3 | Transcriptional activator of nitrogen-regulated genes |
| YNL054W | -1 | -0.337 | VAC7 | |
| YGR094W | -1 | -0.344 | vas1 | mitochondrial and cytoplasmic valyl-tRNA synthetase |
| YDR172W | -1 | -0.345 | sup35 | putative translation factor |
| YDL052C | -1 | -0.352 | SLC1 | putative 1-acyl-sn-gylcerol-3-phosphate acyl transferase |
| YDR292C | -1 | -0.357 | SRP101 | signal recognition particle receptor - alpha subunit |
| YOL140W | -1 | -0.358 | arg8 | Acetylornithine aminotransferase |
| YJR158W | -1 | -0.365 | HXT16 | hexose permease |
| YPL161C | -1 | -0.372 | BEM4 | |
| YIL109C | -1 | -0.372 | SEC24 | vesicle coat component |
| YCL029C | -1 | -0.372 | BIK1 | |
| YPR106W | -1 | -0.389 | ISR1 | protein kinase |
| YPR034W | -1 | -0.398 | ARP7 | actin related protein, subunit of the chromatin remodeling Snf\/Swi complex |
| YDR481C | -1 | -0.411 | pho8 | repressible alkaline phosphatase |
| YHR047C | -1 | -0.42 | AAP1' | arginine\/alanine aminopeptidase |
| YNL030W | -1 | -0.426 | HHF2 | Histone H4 (HHF1 and HHF2 code for identical proteins) |
| YLR220W | -1 | -0.432 | CCC1 | Possible transmembrane Ca2+ transporter |
| YKR050W | -1 | -0.451 | trk2 | membrane protein\; low affinity potassium transport |
| YDR058C | -1 | -0.451 | TGL2 | Triglyceride Lipase |
| YCR035C | -1 | -0.468 | RRP43 | Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p). |
| YLR244C | -1 | -0.492 | MAP1 | methionine aminopeptidase |
| YLR439W | -1 | -0.496 | MRPL4 | Mitochondrial 60S ribosomal protein L4 |
| YEL032W | -1 | -0.508 | mcm3 | |
| YJL157C | -1 | -0.516 | FAR1 | Cdc28p kinase inhibitor |
| YNL126W | -1 | -0.533 | SPC98 | spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP |
| YEL037C | -1 | -0.539 | rad23 | ubiquitin-like protein |
| YIL159W | -1 | -0.559 | BNR1 | |
| YBR129C | -1 | -0.564 | OPY1 | |
| YNL106C | -1 | -0.566 | INP52 | inositol polyphosphate 5-phosphatase |
| YGL094C | -1 | -0.566 | PAN2 | 135-kDa protein that is subunit of poly(A) ribonuclease |
| YFR049W | -1 | -0.574 | YMR31 | mitochondrial ribosomal protein (precursor) |
| YGL195W | -1 | -0.576 | GCN1 | translational activator of GCN4 through activation of GCN2 in response to starvation |
| YGR044C | -1 | -0.579 | rme1 | zinc finger protein\; negative regulator of meiosis\; directly repressed by a1-a2 regulator |
| YMR072W | -1 | -0.581 | ABF2 | HMG-1 homolog, mitochondrial |
| YDL128W | -1 | -0.587 | VCX1 | vacuolar H+\/Ca2+ exchanger |
| YJR137C | -1 | -0.588 | ECM17 | Putative sulfite reductase |
| YML062C | -1 | -0.601 | MFT1 | mitochondrial targeting protein |
| YDR173C | -1 | -0.614 | arg82 | |
| YBR010W | -1 | -0.615 | HHT1 | Histone H3 (HHT1 and HHT2 code for identical proteins) |
| YDR217C | -1 | -0.618 | rad9 | cell cycle arrest protein |
| YDL195W | -1 | -0.627 | SEC31 | Component (p150) of COPII coat of secretory pathway vesicles |
| YJL042W | -1 | -0.628 | MHP1 | Putative microtubule-associated protein (MAP) |
| YNL251C | -1 | -0.635 | NRD1 | |
| YGR056W | -1 | -0.637 | RSC1 | Member of RSC complex |
| YLR032W | -1 | -0.641 | RAD5 | putative ATPase\/DNA helicase |
| YDR195W | -1 | -0.645 | REF2 | |
| YNL061W | -1 | -0.646 | NOP2 | 90-kDa protein, located in nucleolus, that is homologous to a human proliferation-associated nucleolar protein, p120 |
| YML010W | -1 | -0.648 | spt5 | transcription factor |
| YLR438W | -1 | -0.649 | car2 | ornithine aminotransferase |
| YNL031C | -1 | -0.656 | HHT2 | Histone H3 (HHT1 and HHT2 code for identical proteins) |
| YBR131W | -1 | -0.661 | CCZ1 | |
| YGR276C | -1 | -0.67 | RNH70 | ribonuclease H |
| YNL216W | -1 | -0.672 | rap1 | repressor activator protein |
| YJR090C | -1 | -0.68 | grr1 | |
| YIR006C | -1 | -0.683 | PAN1 | |
| YFR002W | -1 | -0.688 | NIC96 | 96 kDa nucleoporin-interacting component |
| YJL179W | -1 | -0.698 | PFD1 | Putative homolog of subunit 1 of bovine prefoldin, a chaperone comprised of six subunits |
| YOL130W | -1 | -0.702 | ALR1 | putative ion transporter |
| YPL023C | -1 | -0.714 | MET12 | putative methylenetetrahydrofolate reductase (mthfr) |
| YKL191W | -1 | -0.741 | DPH2 | |
| YOR321W | -1 | -0.745 | PMT3 | dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase |
| YEL012W | -1 | -0.747 | UBC8 | ubiquitin-conjugating enzyme\; ubiquitin-protein ligase |
| YKR004C | -1 | -0.764 | ECM9 | |
| YDR188W | -1 | -0.764 | CCT6 | |
| YNR052C | -1 | -0.769 | POP2 | Putative transcription factor |
| YKR034W | -1 | -0.773 | DAL80 | negative regulator of multiple nitrogen catabolic genes |
| YNL327W | -1 | -0.774 | EGT2 | |
| YBR090C-A | -1 | -0.796 | ||
| YKL182W | -1 | -0.799 | fas1 | pentafunctional enzyme consisting of the following domains : acetyl transferase, enoyl reductase, dehydratase and malonyl\/palmityl transferase |
| YAL054C | -1 | -0.799 | acs1 | inducible acetyl-coenzyme A synthetase |
| YIR004W | -1 | -0.8 | DJP1 | |
| YIL101C | -1 | -0.805 | XBP1 | transcriptional repressor |
| YPR189W | -1 | -0.816 | ski3 | Contains 8 copies of the TPR domain |
| YER073W | -1 | -0.816 | ALD5 | mitochondrial Aldehyde Dehydrogenase |
| YGL190C | -1 | -0.82 | cdc55 | Protein phosphatase 2A regulatory subunit B |
| YGR186W | -1 | -0.825 | TFG1 | Transcription factor TFIIF large subunit |
| YDR381W | -1 | -0.826 | YRA1 | Nuclear RNA-binding RNA annealing protein |
| YKR101W | -1 | -0.828 | sir1 | repressor of silent mating loci |
| YBR133C | -1 | -0.829 | HSL7 | |
| YKL015W | -1 | -0.843 | put3 | zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type |
| YGR084C | -1 | -0.87 | MRP13 | 35 kDa mitochondrial ribosomal small subunit protein |
| YDL197C | -1 | -0.87 | asf2 | |
| YPR024W | -1 | -0.889 | YME1 | |
| YPR058W | -1 | -0.899 | ymc1 | putative mitochondrial carrier protein |
| YHR006W | -1 | -0.902 | STP2 | |
| YLR098C | -1 | -0.904 | CHA4 | DNA-binding transcriptional activator or CHA1 |
| YCL027W | -1 | -0.912 | FUS1 | serine\/threonine-rich membrane protein |
| YLR188W | -1 | -0.917 | MDL1 | |
| YKL022C | -1 | -0.924 | cdc16 | putative metal-binding nucleic acid-binding protein, interacts with Cdc23p and Cdc27p to catalyze the conjugation of ubiquitin to cyclin B |
| YDR498C | -1 | -0.931 | SEC20 | membrane glycoprotein, sorted by HDEL retrieval system |
| YJL210W | -1 | -0.932 | PEX2 | CH3HC4 zinc-binding integral peroxisomal membrane protein |
| YBL033C | -1 | -0.939 | rib1 | GTP cyclohydrolase II |
| YIR032C | -1 | -0.942 | dal3 | ureidoglycolate hydrolase |
| YPL118W | -1 | -0.944 | MRP51 | Component of small subunit of the mitochondrial ribosome |
| YMR179W | -1 | -0.944 | spt21 | non-specific DNA binding protein |
| YDL224C | -1 | -0.944 | WHI4 | Possible RNA binding protein. Homolog of Whi3. |
| YDR443C | -1 | -0.945 | ssn2 | RNA polymerase II holoenzyme component |
| YGL181W | -1 | -0.95 | GTS1 | Glycine-threonine-serine repeat protein |
| YPR193C | -1 | -0.951 | HPA2 | Histone acetyltransferase |
| YJR131W | -1 | -0.982 | MNS1 | specific alpha-mannosidase |
| YKR099W | 1 | -0.986 | bas1 | transcription factor |
| YDL059C | -1 | -0.99 | RAD59 | The RAD59 gene product has homology to the Rad52 protein. |
| YNR017W | -1 | -0.993 | MAS6 | 23 kDa mitochondrial inner membrane protein |
| YHR189W | -1 | -0.994 | ||
| YKL087C | -1 | -0.999 | CYT2 | cytochrome c1 heme lyase |
| YPR138C | -1 | -1 | MEP3 | NH4+ transporter, highly similar to Mep1p and Mep2p |
| YMR282C | -1 | -1 | AEP2 | basic, hydrophilic 67.5 kDa protein |
| YPR065W | -1 | -1.01 | ROX1 | HMG-domain site-specific DNA binding protein. |
| YGR218W | -1 | -1.01 | CRM1 | Chromosome region maintenance protein |
| YBR201W | -1 | -1.01 | DER1 | |
| YMR109W | -1 | -1.02 | MYO5 | myosin I |
| YIL146C | -1 | -1.02 | ECM37 | |
| YDR436W | -1 | -1.02 | PPZ2 | serine-threonine phosphatase Z |
| YDR191W | -1 | -1.02 | HST4 | |
| YDR460W | -1 | -1.03 | TFB3 | TFIIH subunit Tfb3 , contains ring finger motif\; similar to mammalian CAK subunit |
| YDR167W | -1 | -1.03 | TAF25 | TFIID subunit |
| YCR020C | -1 | -1.03 | PET18 | |
| YKL041W | -1 | -1.04 | VPS24 | |
| YGL180W | -1 | -1.04 | APG1 | Protein kinase |
| YDR224C | -1 | -1.05 | HTB1 | Histone H2B (HTB1 and HTB2 code for nearly identical proteins) |
| YDR194C | -1 | -1.05 | MSS116 | Mitochondrial DEAD box RNA helicase |
| YDL102W | -1 | -1.05 | cdc2 | largest and catalytic subunit of DNA polymerase III (delta) |
| YHL004W | -1 | -1.06 | MRP4 | mitochondrial ribosomal protein, homologous to E. coli ribosomal protein S2, component of the 37 S subunit of mitochondrial ribosomes |
| YDR211W | -1 | -1.06 | GCD6 | Translation initiation factor eIF-2B epsilon subunit |
| YBR289W | -1 | -1.06 | SNF5 | subunit of the chromatin remodeling Snf\/Swi complex |
| YPR164W | -1 | -1.07 | KIM3 | |
| YNR015W | -1 | -1.07 | smm1 | |
| YDR362C | -1 | -1.07 | TFC6 | 91 kDa tau91 subunit of transcription factor IIIC (TFIIIC) |
| YDL122W | -1 | -1.07 | UBP1 | Ubiquitin-specific protease |
| YPL195W | -1 | -1.08 | APL5 | delta-like subunit of the yeast AP-3 adaptin component of the membrane-associated clathrin assembly complex |
| YOL051W | -1 | -1.08 | gal11 | Component of the RNA polymerase II holoenzyme complex, positive and negative transcriptional regulator of genes involved in mating-type specialization |
| YKL048C | -1 | -1.08 | ELM1 | protein kinase |
| YPR190C | -1 | -1.09 | RPC82 | 82-kDa subunit of RNA polymerase III (C) |
| YMR059W | -1 | -1.09 | SEN15 | 15kDa subunit of the tetrameric tRNA splicing endonuclease |
| YKR019C | -1 | -1.09 | IRS4 | |
| YIL139C | -1 | -1.09 | rev7 | subunit of DNA polymerase-zeta (Pol-zeta), an enzyme whose sole function appears to be translesion synthesis |
| YGR009C | -1 | -1.09 | SEC9 | Putative t-SNARE of the plasma membrane |
| YER149C | -1 | -1.09 | PEA2 | Protein with coiled-coil domain |
| YOR098C | -1 | -1.1 | nup1 | nuclear pore complex protein |
| YOL135C | -1 | -1.1 | MED7 | Stoichiometric member of mediator complex |
| YOL021C | -1 | -1.1 | DIS3 | 3'-5' exoribonuclease complex subunit |
| YLR335W | -1 | -1.1 | NUP2 | nuclear pore complex protein with central repetitive domain similar to that of NSP1 and NUP1 |
| YGR184C | -1 | -1.1 | UBR1 | Ubiquitin-protein ligase |
| YDR502C | -1 | -1.1 | sam2 | S-adenosylmethionine synthetase |
| YDL210W | -1 | -1.1 | uga4 | GABA-specific transport protein |
| YOR355W | -1 | -1.11 | GDS1 | |
| YOL126C | -1 | -1.11 | MDH2 | cytosolic malate dehydrogenase |
| YML042W | -1 | -1.11 | CAT2 | Carnitine O-acetyltransferase, peroxisomal and mitochondrial |
| YKL167C | -1 | -1.11 | MRP49 | 16 kDa mitochondrial ribosomal large subunit protein |
| YFR025C | -1 | -1.11 | his2 | Histidinolphosphatase |
| YDR075W | -1 | -1.11 | pph3 | protein phosphatase type 2A |
| YPR163C | -1 | -1.12 | TIF3 | Translation initiation factor eIF-4B |
| YJR143C | -1 | -1.12 | PMT4 | dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase |
| YBR294W | -1 | -1.12 | SUL1 | |
| YPL175W | -1 | -1.13 | spt14 | N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein |
| YJR006W | -1 | -1.13 | HYS2 | DNA polymerase delta 55 KD subunit |
| YDR123C | -1 | -1.13 | INO2 | helix-loop-helix protein |
| YAR008W | -1 | -1.14 | SEN34 | 34kDa subunit of the tetrameric tRNA splicing endonuclease |
| YMR186W | -1 | -1.15 | HSC82 | constitutively expressed heat shock protein |
| YLR093C | -1 | -1.15 | NYV1 | vacuolar v-SNARE |
| YGL233W | -1 | -1.15 | SEC15 | 113kD component of the Exocyst complex, which contains the gene products encoded by SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70. |
| YGL192W | -1 | -1.15 | ime4 | transcription factor |
| YML098W | -1 | -1.16 | TAF19 | TFIID subunit |
| YJL194W | -1 | -1.16 | cdc6 | pre-initiation complex component |
| YGR013W | -1 | -1.16 | SNU71 | |
| YBR182C | -1 | -1.16 | SMP1 | |
| YBR146W | -1 | -1.16 | MRPS9 | Probable mitochondrial ribosomal protein S9 |
| YER008C | -1 | -1.17 | sec3 | SEC3 encodes the 144 kD and 91 kD components of the Exocyst complex\; the 91 kD component is a C-terminal proteolytic breakdown product of full length Sec3p |
| YCL014W | -1 | -1.17 | bud3 | |
| YLR292C | -1 | -1.18 | SEC72 | protein involved in membrane protein insertion into the ER |
| YLR163C | -1 | -1.18 | MAS1 | mitochondrial processing protease subunit |
| YGR083C | -1 | -1.19 | gcd2 | translation initiation factor eIF2B, 71 kDa (delta) subunit\; translational repressor of GCN4 protein |
| YJL081C | -1 | -1.2 | ARP4 | 54.8 kDa actin-related protein |
| YGL012W | -1 | -1.2 | ERG4 | Sterol C-24 reductase |
| YDR127W | -1 | -1.2 | aro1 | pentafunctional arom polypeptide (contains: 3-dehydroquinate synthase, 3-dehydroquinate dehydratase (3-dehydroquinase), shikimate 5-dehydrogenase, shikimate kinase, and epsp synthase) |
| YOL025W | -1 | -1.21 | LAG2 | |
| YDR144C | -1 | -1.21 | MKC7 | aspartyl protease related to Yap3p |
| YCR018C | -1 | -1.21 | srd1 | |
| YIR029W | -1 | -1.22 | dal2 | allantoicase |
| YER029C | -1 | -1.22 | SMB1 | |
| YDL205C | -1 | -1.22 | HEM3 | phorphobilinogen deaminase (uroporphyrinogen synthase), the third step in heme biosynthesis |
| YLR288C | -1 | -1.23 | MEC3 | |
| YKL019W | -1 | -1.23 | RAM2 | CAAX farnesyltransferase alpha subunit |
| YML130C | -1 | -1.24 | ERO1 | |
| YEL003W | -1 | -1.24 | GIM4 | Putative homolog of subunit 2 of bovine prefoldin, a chaperone comprised of six subunits |
| YNL316C | -1 | -1.25 | pha2 | prephenate dehydratase |
| YHR027C | -1 | -1.25 | RPN1 | Subunit of 26S Proteasome (PA700 subunit) |
| YBR045C | -1 | -1.25 | GIP1 | |
| YBL021C | -1 | -1.25 | HAP3 | transcriptional activator protein of CYC1 |
| YPL232W | -1 | -1.26 | SSO1 | post-Golgi t-SNARE |
| YLR195C | -1 | -1.26 | nmt1 | N-myristoyl transferase |
| YGR057C | -1 | -1.26 | LST7 | |
| YDL132W | -1 | -1.26 | cdc53 | |
| YMR301C | -1 | -1.27 | ATM1 | mitochondrial ABC transporter protein |
| YLR383W | -1 | -1.27 | RHC18 | |
| YLR141W | -1 | -1.27 | RRN5 | transcription factor, member of UAF (upstream activation factor) along with Rrn9p and Rrn10p |
| YKR036C | -1 | -1.28 | CAF4 | component of CCR4 transcriptional complex |
| YJL023C | -1 | -1.28 | PET130 | |
| YPL119C | -1 | -1.3 | DBP1 | putative ATP-dependent RNA helicase\; Dead box protein |
| YKL205W | -1 | -1.3 | LOS1 | |
| YJL013C | -1 | -1.3 | MAD3 | spindle checkpoint complex subunit |
| YHL027W | -1 | -1.3 | RIM101 | |
| YGR098C | -1 | -1.3 | esp1 | |
| YNL148C | -1 | -1.31 | ALF1 | cofactor B |
| YJL140W | -1 | -1.31 | RPB4 | fourth-largest subunit of RNA polymerase II |
| YGR162W | -1 | -1.31 | TIF4631 | mRNA cap-binding protein (eIF-4F), 150K subunit , highly homologous to Tif4632p, homologs of mammalian p220 |
| YOL007C | -1 | -1.32 | CSI2 | Appears to be a structural component of the chitin synthase 3 complex |
| YNR072W | -1 | -1.32 | HXT17 | Putative hexose transporter |
| YLR452C | -1 | -1.32 | sst2 | member of the RGS (regulator of G-protein signalling) family\; GTPase-activating protein |
| YGR233C | -1 | -1.32 | pho81 | |
| YBR065C | -1 | -1.32 | ECM2 | |
| YNL322C | -1 | -1.33 | kre1 | |
| YLR055C | -1 | -1.33 | spt8 | transcription factor, probable member of histone acetyltransferase SAGA complex |
| YOL110W | -1 | -1.34 | SHR5 | |
| YOL023W | -1 | -1.34 | IFM1 | mitochondrial initiation factor 2 |
| YKR085C | -1 | -1.34 | MRPL20 | 22.3 kDa mitochondrial ribosomal large subunit protein YmL20\; homologous to L17 of E. coli |
| YKR054C | -1 | -1.34 | DYN1 | heavy chain of cytoplasmic dynein |
| YJL127C | -1 | -1.34 | spt10 | negative transcriptional regulator |
| YCL008C | -1 | -1.34 | stp22 | |
| YBR251W | -1 | -1.34 | MRPS5 | Probable mitochondrial ribosomal protein S5 |
| YBL052C | -1 | -1.34 | SAS3 | |
| YOR278W | -1 | -1.35 | HEM4 | uroporphyrinogen III synthase |
| YIR028W | -1 | -1.35 | dal4 | allantoin permease |
| YPL259C | -1 | -1.36 | APM1 | medium subunit of the clathrin-associated protein complex |
| YGR074W | -1 | -1.36 | SMD1 | |
| YGL203C | -1 | -1.36 | kex1 | carboxypeptidase B-like processing protease |
| YBR268W | -1 | -1.37 | MRPL37 | Probable mitochondrial protein L37 |
| YLR216C | -1 | -1.38 | CPR6 | |
| YIR011C | -1 | -1.38 | STS1 | |
| YHR072W | -1 | -1.38 | ERG7 | 2,3-oxidosqualene-lanosterol cyclase |
| YFR050C | -1 | -1.38 | PRE4 | proteasome subunit necessary for peptidyl glutamyl peptide hydrolyzing activity |
| YDL005C | -1 | -1.38 | MED2 | Stoichiometric member of mediator complex |
| YBR200W | -1 | -1.38 | BEM1 | contains two SH3 domains |
| YPL042C | -1 | -1.39 | ssn3 | a cyclin(SSN8)-dependent serine\/threonine protein kinase |
| YOR377W | -1 | -1.39 | ATF1 | Alcohol acetyltransferase |
| YNL277W | -1 | -1.39 | met2 | homoserine O-trans-acetylase |
| YMR205C | -1 | -1.39 | pfk2 | phosphofructokinase beta subunit |
| YKL139W | -1 | -1.39 | CTK1 | |
| YJR092W | -1 | -1.39 | BUD4 | |
| YGL089C | -1 | -1.39 | mf(alpha)2 | alpha mating factor |
| YPL163C | -1 | -1.4 | SVS1 | Serine and threonine rich protein. |
| YOR217W | -1 | -1.4 | RFC1 | Subunit 1 of Replication Factor C\; homologous to human RFC 140 kDa subunit |
| YNL214W | -1 | -1.4 | PEX17 | 23 kDa peroxisome associated protein, binds Pex14p |
| YIL045W | -1 | -1.4 | PIG2 | Protein with 30\% identity to protein corresponding to YER054 |
| YFL002C | -1 | -1.4 | SPB4 | ATP-dependent RNA helicase |
| YDR477W | -1 | -1.4 | snf1 | protein serine\/threonine kinase |
| YBR253W | -1 | -1.4 | SRB6 | transcription factor, part of Srb\/Mediator complex |
| YKL188C | -1 | -1.41 | PXA2 | peroxisomal ABC transporter 2 |
| YHL028W | -1 | -1.41 | WSC4 | Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3 |
| YER016W | -1 | -1.41 | BIM1 | |
| YER011W | -1 | -1.41 | TIR1 | |
| YPL115C | -1 | -1.42 | BEM3 | has GTPase-activating protein activity toward the essential bud-site assembly GTPase Cdc42 |
| YOL020W | -1 | -1.42 | TAT2 | Tryptophan permease, high affinity |
| YHR200W | -1 | -1.42 | RPN10 | homolog of the mammalian S5a protein, component of 26S proteasome |
| YBR142W | -1 | -1.42 | mak5 | |
| YBL001C | -1 | -1.42 | ECM15 | |
| YNR007C | -1 | -1.43 | AUT1 | |
| YGR092W | -1 | -1.43 | dbf2 | Serine\/threonine protein kinase |
| YGL163C | -1 | -1.43 | rad54 | DNA-dependent ATPase |
| YPL253C | -1 | -1.44 | VIK1 | Cik1p homolog |
| YLR355C | -1 | -1.44 | ilv5 | acetohydroxyacid reductoisomerase |
| YJL033W | -1 | -1.44 | HCA4 | putative RNA helicase |
| YIL168W | -1 | -1.44 | SDL1 | L-serine dehydratase |
| YBR037C | -1 | -1.44 | SCO1 | inner mitochondrial membrane protein |
| YPR167C | -1 | -1.45 | MET16 | 3'phosphoadenylylsulfate reductase |
| YPL256C | -1 | -1.45 | CLN2 | G(sub)1 cyclin |
| YLR260W | -1 | -1.45 | LCB5 | sphingoid long chain base (LCB) kinase |
| YGL009C | -1 | -1.45 | leu1 | isopropylmalate isomerase |
| YDL101C | -1 | -1.45 | dun1 | protein kinase |
| YBL097W | -1 | -1.45 | BRN1 | |
| YBL023C | -1 | -1.45 | mcm2 | |
| YML120C | -1 | -1.46 | NDI1 | mitochondrial NADH ubiquinone 6 oxidoreductase |
| YLR119W | -1 | -1.46 | SRN2 | |
| YER114C | -1 | -1.46 | BOI2 | |
| YCL001W | -1 | -1.46 | RER1 | |
| YBR114W | -1 | -1.46 | rad16 | |
| YMR043W | -1 | -1.47 | mcm1 | transcription factor containing the 56 amino-acid MADS (MCM1, AG, DEFAm SRF)-box motif within its DNA binding domain, plays a central role in the formation of both repressor and activator complexes |
| YML116W | -1 | -1.47 | atr1 | predicted protein is very hydrophobic, has many membrane-spanning regions, several potential glycosylation sites, potential ATP-binding site |
| YJL044C | -1 | -1.47 | GYP6 | GTPase-activating protein for Ypt6 |
| YHR077C | -1 | -1.47 | NMD2 | |
| YHL025W | -1 | -1.47 | SNF6 | subunit of the chromatin remodeling Snf\/Swi complex |
| YGL210W | -1 | -1.47 | YPT32 | ras-like GTPase, highly homologous to YPT31 |
| YGL049C | -1 | -1.47 | TIF4632 | mRNA cap-binding protein (eIF-4F), 130K subunit |
| YDL170W | -1 | -1.47 | UGA3 | zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type |
| YCR093W | -1 | -1.47 | cdc39 | nuclear protein that negatively regulates basal transcription |
| YGR055W | -1 | -1.48 | MUP1 | high affinity methionine permease |
| YDL179W | -1 | -1.48 | PCL9 | |
| YJL129C | -1 | -1.49 | trk1 | 180 kDa high affinity potassium transporter |
| YDR156W | -1 | -1.49 | RPA14 | RNA polymerase I subunit A14 |
| YJR147W | 1 | -1.5 | HMS2 | heat shock transcription factor homolog |
| YJR095W | -1 | -1.5 | ACR1 | protein related to mitochondrial carriers |
| YHR094C | -1 | -1.5 | hxt1 | High-affinity hexose (glucose) transporter |
| YBR257W | -1 | -1.5 | POP4 | |
| YLL011W | -1 | -1.51 | SOF1 | 56 kDa nucleolar snRNP protein that shows homology to beta subunits of G-proteins and the splicing factor Prp4 |
| YGR063C | -1 | -1.51 | spt4 | Zn-finger protein, transcriptional regulator |
| YDR364C | -1 | -1.51 | cdc40 | Member of the beta transducin family |
| YBR198C | -1 | -1.51 | TAF90 | |
| YPR066W | -1 | -1.52 | UBA3 | ubiquitin-like protein activating enzyme |
| YOL044W | -1 | -1.52 | PEX15 | 44 kDa phosphorylated integral peroxisomal membrane protein |
| YOR211C | -1 | -1.53 | mgm1 | encodes protein with GTP-binding domain related to dynamin |
| YKL021C | -1 | -1.53 | mak11 | contains four beta-transducin repeats |
| YGR229C | -1 | -1.53 | SMI1 | 57 kDa nuclear protein |
| YDL095W | -1 | -1.53 | PMT1 | dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase |
| YCL055W | -1</ |