| gene | class | score | Locus Name | GeneProduct |
| YGL048C | 1 | 1.5 | RPT6 | ATPase |
| YFR050C | 1 | 1.47 | PRE4 | proteasome subunit necessary for peptidyl glutamyl peptide hydrolyzing activity |
| YDR394W | 1 | 1.22 | RPT3 | |
| YPR103W | 1 | 1.2 | PRE2 | proteasome subunit |
| YDR427W | 1 | 1.17 | RPN9 | Subunit of the regulatory particle of the proteasome |
| YJL001W | 1 | 1.11 | PRE3 | Subunit of 20S proteasome |
| YOR259C | 1 | 1.1 | RPT4 | ATPase\; component of the 26S proteasome cap subunit |
| YGR135W | 1 | 1.07 | PRE9 | proteasome component Y13 |
| YKL145W | 1 | 1.05 | RPT1 | putative ATPase, 26S protease subunit component |
| YDL097C | 1 | 0.988 | RPN6 | Subunit of the regulatory particle of the proteasome |
| YER021W | 1 | 0.984 | RPN3 | component of the regulatory module of the 26S proteasome, homologous to human p58 subunit |
| YGR253C | 1 | 0.969 | PUP2 | Proteasome subunit |
| YPR108W | 1 | 0.878 | RPN7 | Subunit of the regulatory particle of the proteasome |
| YFR004W | 1 | 0.865 | RPN11 | Similar to S. pombe PAD1 gene product |
| YGL011C | 1 | 0.828 | SCL1 | Proteasome subunit YC7alpha\/Y8 (protease yscE subunit 7) |
| YER012W | 1 | 0.739 | pre1 | 22.6 kDa proteasome subunit |
| YGR048W | -1 | 0.694 | UFD1 | |
| YOR157C | 1 | 0.672 | pup1 | putative proteasome subunit |
| YMR314W | 1 | 0.631 | PRE5 | alpha-type of subunit of 20S proteasome |
| YHR200W | 1 | 0.556 | RPN10 | homolog of the mammalian S5a protein, component of 26S proteasome |
| YIL075C | 1 | 0.303 | RPN2 | RPN2p is a component of the 26S proteosome |
| YOR362C | 1 | 0.3 | PRE10 | proteasome component YC1 (protease yscE subunit 1) |
| YBR173C | 1 | 0.294 | UMP1 | 20S proteasome maturation factor |
| YER094C | 1 | 0.275 | PUP3 | 20S proteasome subunit beta3_sc |
| YOR117W | 1 | 0.24 | RPT5 | |
| YFR052W | 1 | 0.174 | RPN12 | cytoplasmic 32 - 34 kDa protein |
| YDR510W | -1 | 0.13 | SMT3 | |
| YOL038W | 1 | 0.0635 | PRE6 | alpha-type of subunit of 20S proteasome |
| YML092C | 1 | 0.0425 | PRE8 | proteasome component Y7 |
| YHL034C | -1 | -0.111 | sbp1 | |
| YBL041W | 1 | -0.113 | PRE7 | proteasome subunit |
| YMR022W | -1 | -0.183 | QRI8 | ubiquitin conjugating enzyme |
| YML007W | -1 | -0.192 | YAP1 | jun-like transcription factor |
| YDL007W | 1 | -0.219 | RPT2 | |
| YDR054C | -1 | -0.231 | cdc34 | ubiquitin-conjugating enzyme, E2 |
| YLR025W | -1 | -0.249 | snf7 | |
| YOL049W | -1 | -0.251 | GSH2 | Glutathione Synthetase |
| YJL053W | -1 | -0.253 | PEP8 | Vacuolar protein similar to mouse gene H |
| YJL008C | -1 | -0.347 | CCT8 | Component of Chaperonin Containing T-complex subunit eight |
| YDL147W | 1 | -0.356 | RPN5 | Subunit of the regulatory particle of the proteasome |
| YDL132W | -1 | -0.435 | cdc53 | |
| YCL057W | -1 | -0.442 | prd1 | Saccharolysin (oligopeptidase yscD) |
| YGR231C | -1 | -0.452 | PHB2 | mitochondrial protein, prohibitin homolog\; homolog of mammalian BAP37 and S. cerevisiae Phb1p |
| YBR119W | -1 | -0.473 | MUD1 | U1 snRNP A protein |
| YGL073W | -1 | -0.487 | HSF1 | heat shock transcription factor |
| YKL117W | -1 | -0.504 | SBA1 | Hsp90 (Ninety) Associated Co-chaperone |
| YHL030W | -1 | -0.538 | ECM29 | |
| YER023W | -1 | -0.585 | pro3 | delta 1-pyrroline-5-carboxylate reductase |
| YCR036W | -1 | -0.587 | RBK1 | ribokinase |
| YDL126C | -1 | -0.597 | CDC48 | |
| YPL240C | -1 | -0.598 | hsp82 | 82 kDa heat shock protein\; homolog of mammalian Hsp90 |
| YJL031C | -1 | -0.603 | BET4 | Geranylgeranyltransferase Type II alpha subunit (PGGTase-II, alpha subunit) |
| YKR052C | -1 | -0.607 | MRS4 | mitochondrial carrier protein, highly homologous to Mrs3p |
| YOL013C | -1 | -0.617 | HRD1 | |
| YGL190C | -1 | -0.621 | cdc55 | Protein phosphatase 2A regulatory subunit B |
| YBR170C | -1 | -0.627 | NPL4 | |
| YFR010W | -1 | -0.629 | UBP6 | |
| YIL171W | -1 | -0.637 | HXT12 | hexose permease |
| YKR066C | -1 | -0.638 | CCP1 | Cytochrome-c peroxidase |
| YEL012W | -1 | -0.64 | UBC8 | ubiquitin-conjugating enzyme\; ubiquitin-protein ligase |
| YER136W | -1 | -0.641 | GDI1 | GDP dissociation inhibitor |
| YMR100W | -1 | -0.65 | MUB1 | |
| YER164W | -1 | -0.661 | CHD1 | transcriptional regulator |
| YDR293C | -1 | -0.665 | ssd1 | putative protein phosphatase |
| YKL015W | -1 | -0.676 | put3 | zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type |
| YDR495C | -1 | -0.678 | vps3 | |
| YOR261C | 1 | -0.679 | RPN8 | Subunit of the regulatory particle of the proteasome |
| YCL052C | -1 | -0.681 | PBN1 | Protease B, nonderepressible form |
| YDR436W | -1 | -0.689 | PPZ2 | serine-threonine phosphatase Z |
| YBR275C | -1 | -0.69 | RIF1 | RAP1-interacting factor, involved in establishment of repressed chromatin |
| YMR280C | -1 | -0.691 | CAT8 | Zinc-cluster protein involved in activating gluconeogenic genes\; related to Gal4p |
| YDR092W | -1 | -0.691 | UBC13 | ubiquitin-conjugating enzyme |
| YDR145W | -1 | -0.699 | TAF61 | TFIID subunit |
| YBR090C-A | -1 | -0.7 | ||
| YLR450W | -1 | -0.701 | hmg2 | 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase isozyme |
| YKR001C | -1 | -0.707 | VPS1 | putative GTP-binding protein\; similar to mammalian Mx proteins |
| YDR148C | -1 | -0.729 | KGD2 | dihydrolipoyl transsuccinylase component of alpha-ketoglutarate dehydrogenase complex in mitochondria |
| YOR176W | -1 | -0.731 | HEM15 | ferrochelatase (protoheme ferrolyase) |
| YHR161C | -1 | -0.733 | YAP1801 | |
| YOL067C | -1 | -0.736 | RTG1 | Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus |
| YBR050C | -1 | -0.737 | REG2 | |
| YPR129W | -1 | -0.739 | SCD6 | |
| YLR292C | -1 | -0.744 | SEC72 | protein involved in membrane protein insertion into the ER |
| YIR022W | -1 | -0.747 | sec11 | signal peptidase subunit |
| YGR186W | -1 | -0.75 | TFG1 | Transcription factor TFIIF large subunit |
| YKR062W | -1 | -0.753 | TFA2 | Small subunit of TFIIE transcription factor |
| YPR122W | -1 | -0.755 | AXL1 | putative homolog of human insulin-degrading endoprotease |
| YMR186W | -1 | -0.755 | HSC82 | constitutively expressed heat shock protein |
| YDR168W | -1 | -0.755 | cdc37 | |
| YNL270C | -1 | -0.762 | ALP1 | Basic amino acid permease |
| YNL064C | -1 | -0.767 | ydj1 | yeast dnaJ homolog (nuclear envelope protein)\; heat shock protein |
| YJR117W | -1 | -0.768 | STE24 | zinc metallo-protease that catalyzes the first step of N-terminal processing of the yeast a-factor precursor |
| YMR004W | -1 | -0.773 | MVP1 | peripheral Golgi membrane protein |
| YKL196C | -1 | -0.773 | YKT6 | v-SNARE |
| YBL058W | -1 | -0.773 | SHP1 | |
| YGL233W | -1 | -0.784 | SEC15 | 113kD component of the Exocyst complex, which contains the gene products encoded by SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70. |
| YPL111W | -1 | -0.785 | car1 | arginase |
| YOR075W | -1 | -0.788 | UFE1 | endoplasmic reticulum t-SNARE, coprecipitates with Sec20p, Tip1p. and Sec22p |
| YGL025C | -1 | -0.789 | PGD1 | |
| YER027C | -1 | -0.791 | GAL83 | |
| YDL160C | -1 | -0.797 | DHH1 | |
| YCR019W | -1 | -0.8 | MAK32 | |
| YIL062C | -1 | -0.802 | ARC15 | |
| YBR256C | -1 | -0.805 | rib5 | Riboflavin synthase alpha-chain |
| YPR173C | -1 | -0.81 | VPS4 | AAA-type ATPase |
| YGL035C | -1 | -0.817 | mig1 | C2H2 zinc finger protein which resembles the mammalian Egr and Wilms tumour proteins |
| YLR273C | -1 | -0.823 | PIG1 | Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit |
| YDL006W | -1 | -0.83 | PTC1 | serine-threonine protein phosphatase |
| YGL087C | -1 | -0.831 | MMS2 | Similar to ubiquitin conjugating protein family |
| YBL101C | -1 | -0.831 | ECM21 | |
| YOL056W | -1 | -0.832 | GPM3 | phosphoglycerate mutase |
| YKR008W | -1 | -0.84 | RSC4 | Member of RSC complex. |
| YCR067C | -1 | -0.841 | SED4 | |
| YER142C | -1 | -0.847 | MAG1 | 3-methyladenine DNA glycosylase |
| YJL168C | -1 | -0.858 | SET2 | transcription factor containing a SET domain |
| YLR268W | -1 | -0.861 | SEC22 | |
| YDL087C | -1 | -0.862 | LUC7 | |
| YER008C | -1 | -0.868 | sec3 | SEC3 encodes the 144 kD and 91 kD components of the Exocyst complex\; the 91 kD component is a C-terminal proteolytic breakdown product of full length Sec3p |
| YMR234W | -1 | -0.869 | rnh1 | ribonuclease H |
| YOL123W | -1 | -0.87 | HRP1 | |
| YDL004W | -1 | -0.87 | ATP16 | ATP synthase delta subunit |
| YDR423C | -1 | -0.873 | cad1 | basic leucine zipper transcription factor |
| YER022W | -1 | -0.875 | SRB4 | subunit of RNA polymerase II holoenzyme\/mediator complex |
| YNL012W | -1 | -0.878 | spo1 | encodes a protein with high similarity to phospholipase B |
| YGR080W | -1 | -0.881 | TWF1 | Twinfilin A, an actin monomer sequestering protein |
| YDR353W | -1 | -0.883 | TRR1 | Thioredoxin reductase |
| YKL019W | -1 | -0.885 | RAM2 | CAAX farnesyltransferase alpha subunit |
| YGR097W | -1 | -0.886 | ASK10 | transcriptional activator of the SKN7 mediated 'two-component' regulatory system |
| YMR276W | -1 | -0.888 | DSK2 | ubiquitin-like protein |
| YKL025C | -1 | -0.891 | PAN3 | 76-kDa subunit of Pab1p-dependent poly(A) ribonuclease (PAN) |
| YCR042C | -1 | -0.894 | TSM1 | TATA binding protein-associated factor (TAF) |
| YGL163C | -1 | -0.9 | rad54 | DNA-dependent ATPase |
| YLR430W | -1 | -0.902 | sen1 | component of a nuclear-localized tRNA splicing complex |
| YDR258C | -1 | -0.908 | HSP78 | Mitochondrial heat shock protein 78 kDa |
| YFL036W | -1 | -0.911 | RPO41 | mitochondrial RNA polymerase II |
| YGR167W | -1 | -0.913 | CLC1 | Clathrin light chain |
| YML130C | -1 | -0.916 | ERO1 | |
| YHR012W | -1 | -0.917 | VPS29 | |
| YDR059C | -1 | -0.918 | ubc5 | ubiquitin-conjugating enzyme |
| YGL145W | -1 | -0.919 | TIP20 | transport protein that interacts with Sec20p\; required for protein transport from the endoplasmic reticulum to the golgi apparatus |
| YOR221C | -1 | -0.92 | MCT1 | malonyl CoA |
| YHR117W | -1 | -0.92 | TOM71 | 71-kDa component of the protein translocase of the outer membrane of mitochondria |
| YOR321W | -1 | -0.924 | PMT3 | dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase |
| YLR115W | -1 | -0.927 | CFT2 | Component of cleavage factor II (CF II)\; 105-kDa protein associated with polyadenylation factor 1 (PF I) |
| YGL210W | -1 | -0.929 | YPT32 | ras-like GTPase, highly homologous to YPT31 |
| YHL019C | -1 | -0.932 | APM2 | |
| YGL229C | -1 | -0.933 | SAP4 | |
| YOR046C | -1 | -0.934 | DBP5 | RNA helicase |
| YDL029W | -1 | -0.934 | ARP2 | actin-related protein |
| YOR185C | -1 | -0.936 | gsp2 | GTP binding protein, almost identical to Gsp1p |
| YKR009C | -1 | -0.938 | FOX2 | peroxisomal multifunctional beta-oxidation protein |
| YJR144W | -1 | -0.938 | MGM101 | |
| YDR170C | -1 | -0.94 | sec7 | Guanine nucleotide exchange protein for ARF |
| YLR055C | -1 | -0.945 | spt8 | transcription factor, probable member of histone acetyltransferase SAGA complex |
| YDR381W | -1 | -0.946 | YRA1 | Nuclear RNA-binding RNA annealing protein |
| YOR290C | -1 | -0.949 | snf2 | transcriptional regulator |
| YBR130C | -1 | -0.951 | SHE3 | |
| YPR185W | -1 | -0.953 | APG13 | |
| YBR001C | -1 | -0.953 | NTH2 | Neutral trehalase, highly homologous to Nth1p |
| YNL332W | -1 | -0.955 | THI12 | |
| YEL037C | -1 | -0.957 | rad23 | ubiquitin-like protein |
| YDR123C | -1 | -0.957 | INO2 | helix-loop-helix protein |
| YOL004W | -1 | -0.959 | sin3 | DNA binding protein involved in transcriptional regulation |
| YDR176W | -1 | -0.96 | NGG1 | transcription factor\; genetic and mutant analyses suggest that Ngg1p (Ada3p) is part of two transcriptional adaptor\/HAT (histone acetyltransferase complexes, the 0.8 MD ADA complex and the 1.8 MD SAGA complex |
| YHR055C | -1 | -0.961 | CUP1 | copper-binding metallothionein |
| YGR281W | -1 | -0.962 | YOR1 | ABC transporter |
| YER040W | -1 | -0.963 | gln3 | Transcriptional activator of nitrogen-regulated genes |
| YNL241C | -1 | -0.964 | zwf1 | Glucose-6-phosphate dehydrogenase |
| YLR447C | -1 | -0.965 | vma6 | 36 kDa subunit (D subunit of VO sector) of the vacuolar H(+) ATPase\; required for assembly |
| YDR001C | -1 | -0.967 | NTH1 | neutral trehalase |
| YPR088C | -1 | -0.969 | SRP54 | Signal recognition particle subunit |
| YOR124C | -1 | -0.97 | UBP2 | Ubiquitin-specific protease |
| YMR176W | -1 | -0.972 | ECM5 | |
| YDR167W | -1 | -0.972 | TAF25 | TFIID subunit |
| YHR057C | -1 | -0.973 | CYP2 | Peptidylprolyl isomerase (cyclophilin) ER or secreted |
| YER068W | -1 | -0.974 | MOT2 | putative zinc finger protein |
| YIL101C | -1 | -0.976 | XBP1 | transcriptional repressor |
| YBR199W | -1 | -0.978 | KTR4 | Putative alpha-1,2-mannosyltransferase |
| YHR164C | -1 | -0.979 | DNA2 | DNA replication helicase |
| YGL237C | -1 | -0.979 | hap2 | transcriptional activator protein of CYC1 |
| YGR193C | -1 | -0.981 | PDX1 | Protein X component of mitochondrial pyruvate dehydrogenase complex |
| YGL192W | -1 | -0.982 | ime4 | transcription factor |
| YDR058C | -1 | -0.982 | TGL2 | Triglyceride Lipase |
| YLR288C | -1 | -0.984 | MEC3 | |
| YER162C | -1 | -0.985 | rad4 | |
| YGL092W | -1 | -0.988 | NUP145 | |
| YML042W | -1 | -0.989 | CAT2 | Carnitine O-acetyltransferase, peroxisomal and mitochondrial |
| YDR080W | -1 | -0.99 | vps41 | |
| YCL043C | -1 | -0.99 | PDI1 | protein disulfide isomerase |
| YBR279W | -1 | -0.991 | PAF1 | |
| YIL048W | -1 | -0.992 | NEO1 | P-Type ATPase |
| YDR443C | -1 | -0.993 | ssn2 | RNA polymerase II holoenzyme component |
| YPL120W | -1 | -0.998 | VPS30 | |
| YMR203W | -1 | -0.999 | TOM40 | Mitochondrial outer membrane protein\; forms the outer membrane import channel |
| YOL096C | -1 | -1 | COQ3 | 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase |
| YFL055W | -1 | -1 | AGP3 | Amino acid permease |
| YDR004W | -1 | -1 | rad57 | RecA homolog (similar to DMC1, RAD51, and RAD55), interacts with Rad 55p by two-hybrid analysis |
| YPL119C | -1 | -1.01 | DBP1 | putative ATP-dependent RNA helicase\; Dead box protein |
| YMR232W | -1 | -1.01 | fus2 | |
| YMR109W | -1 | -1.01 | MYO5 | myosin I |
| YMR020W | -1 | -1.01 | FMS1 | |
| YKR050W | -1 | -1.01 | trk2 | membrane protein\; low affinity potassium transport |
| YGR255C | -1 | -1.01 | COQ6 | COQ6 monooxygenase |
| YGR209C | -1 | -1.01 | trx2 | thioredoxin |
| YFR037C | -1 | -1.01 | RSC8 | |
| YER059W | -1 | -1.01 | PCL6 | |
| YDR192C | -1 | -1.01 | NUP42 | 42-kD protein associated with nuclear pore complexes\; Nup42p is structurally related to the FG-nucleoporin family of pore proteins |
| YBR080C | -1 | -1.01 | SEC18 | cytoplasmic protein involved in protein transport between ER and Golgi\; ATPase |
| YPR052C | -1 | -1.02 | NHP6A | 11-kDa nonhistone chromosomal protein |
| YNR006W | -1 | -1.02 | VPS27 | hydrophilic protein\; has cysteine rich putative zinc finger esential for function |
| YLR274W | -1 | -1.02 | CDC46 | |
| YJL024C | -1 | -1.02 | APS3 | similar to Aps1p and mammalian small subunit (sigma-2 adaptin) of plasma membrane-associated clathrin assembly complex (AP-2) |
| YDR182W | -1 | -1.02 | CDC1 | |
| YPR199C | -1 | -1.03 | ARR1 | |
| YOR181W | -1 | -1.03 | LAS17 | Actin assembly factor |
| YMR052W | -1 | -1.03 | FAR3 | |
| YJR059W | -1 | -1.03 | PTK2 | |
| YFR053C | -1 | -1.03 | hxk1 | Hexokinase I (PI) (also called Hexokinase A) |
| YDR419W | -1 | -1.03 | RAD30 | similar to E. coli DinB and S. cerevisiae REV1 |
| YDL078C | -1 | -1.03 | MDH3 | malate dehydrogenase |
| YCR009C | -1 | -1.03 | RVS161 | |
| YMR089C | -1 | -1.04 | YTA12 | mitochondrial membrane ATPase of the CDC48\/PAS1\/SEC18 (AAA) family |
| YLR393W | -1 | -1.04 | ATP10 | |
| YHR008C | -1 | -1.04 | sod2 | Manganese-containing superoxide dismutase |
| YER017C | -1 | -1.04 | AFG3 | ATP-dependent metalloprotease |
| YCL050C | -1 | -1.04 | apa1 | diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase I |
| YBR257W | -1 | -1.04 | POP4 | |
| YOR014W | -1 | -1.05 | RTS1 | B-type regulatory subunit of protein phosphatase 2A (PP2A) |
| YNL183C | -1 | -1.05 | NPR1 | protein kinase homolog |
| YLR309C | -1 | -1.05 | IMH1 | |
| YJL174W | -1 | -1.05 | kre9 | |
| YIL138C | -1 | -1.05 | TPM2 | Tropomyosin isoform 2 |
| YIL076W | -1 | -1.05 | SEC28 | epsilon-COP coatomer subunit Sec28p |
| YER169W | -1 | -1.05 | RPH1 | Repressor of PHR1 transcription\; binds to PHR1 URS |
| YCR093W | -1 | -1.05 | cdc39 | nuclear protein that negatively regulates basal transcription |
| YBL066C | -1 | -1.05 | SEF1 | putative transcription factor |
| YAL067C | -1 | -1.05 | SEO1 | putative permease |
| YAL013W | -1 | -1.05 | DEP1 | |
| YPR120C | -1 | -1.06 | CLB5 | B-type cyclin |
| YPR010C | -1 | -1.06 | ||
| YLR378C | -1 | -1.06 | SEC61 | |
| YKR072C | -1 | -1.06 | sis2 | sit4 suppressor |
| YKL201C | -1 | -1.06 | mnn4 | |
| YJR058C | -1 | -1.06 | APS2 | Clathrin-associated protein, small subunit |
| YFR002W | -1 | -1.06 | NIC96 | 96 kDa nucleoporin-interacting component |
| YEL060C | -1 | -1.06 | prb1 | vacuolar protease B |
| YNL071W | -1 | -1.07 | LAT1 | Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex |
| YNL059C | -1 | -1.07 | ARP5 | Actin-related protein |
| YHL027W | -1 | -1.07 | RIM101 | |
| YGR013W | -1 | -1.07 | SNU71 | |
| YDR022C | -1 | -1.07 | CIS1 | |
| YCL051W | -1 | -1.07 | LRE1 | |
| YAL021C | -1 | -1.07 | ccr4 | 95 kDa containng leucine rich tandem repeats |
| YOL064C | -1 | -1.08 | MET22 | 3'(2')5'-bisphosphate nucleotidase |
| YNL318C | -1 | -1.08 | HXT14 | Member of the hexose transporter family |
| YNL137C | -1 | -1.08 | nam9 | putative mitochondrial S4 ribosomal protein |
| YLR216C | -1 | -1.08 | CPR6 | |
| YFR040W | -1 | -1.08 | SAP155 | |
| YFL029C | -1 | -1.08 | CAK1 | Cyclin-dependent kinase-activating kinase |
| YFL009W | -1 | -1.08 | cdc4 | part of a ubiquitin ligase complex |
| YEL032W | -1 | -1.08 | mcm3 | |
| YEL022W | -1 | -1.08 | GEA2 | ARF GTP\/GDP exchange factor |
| YDR439W | -1 | -1.08 | LRS4 | |
| YDR356W | -1 | -1.08 | NUF1 | component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein |
| YBR278W | -1 | -1.08 | DPB3 | C and C' subunits of DNA polymerase II |
| YAL054C | -1 | -1.08 | acs1 | inducible acetyl-coenzyme A synthetase |
| YAL030W | -1 | -1.08 | SNC1 | homolog of Snc2p, vesicle-associated membrane protein (synaptobrevin) homolog, forms a complex with Snc2p and Sec9p |
| YPL224C | -1 | -1.09 | MMT2 | |
| YPL122C | -1 | -1.09 | TFB2 | TFIIH subunit Tfb2\; has homology to CAK and human IIH subunits |
| YPL085W | -1 | -1.09 | SEC16 | vesicle coat component |
| YNL298W | -1 | -1.09 | CLA4 | protein kinase, homologous to Ste20p, interacts with CDC42 |
| YJL005W | -1 | -1.09 | CYR1 | adenylate cyclase |
| YGL206C | -1 | -1.09 | chc1 | presumed vesicle coat protein |
| YGL195W | -1 | -1.09 | GCN1 | translational activator of GCN4 through activation of GCN2 in response to starvation |
| YFL058W | -1 | -1.09 | THI5 | a thiamine regulated pyrimidine precursor biosynthesis enzyme |
| YER168C | -1 | -1.09 | CCA1 | tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase) |
| YER155C | -1 | -1.09 | bem2 | Rho-type GTPase activating protein (GAP) |
| YDR460W | -1 | -1.09 | TFB3 | TFIIH subunit Tfb3 , contains ring finger motif\; similar to mammalian CAK subunit |
| YDR263C | -1 | -1.09 | DIN7 | |
| YDR171W | -1 | -1.09 | HSP42 | |
| YDL005C | -1 | -1.09 | MED2 | Stoichiometric member of mediator complex |
| YNL027W | -1 | -1.1 | CRZ1 | putative transcription factor |
| YMR302C | -1 | -1.1 | prp12 | Integral membrane mitochondrial protein |
| YKL104C | -1 | -1.1 | GFA1 | Glutamine_fructose-6-phosphate amidotransferase (glucoseamine-6-phosphate synthase) |
| YJR148W | -1 | -1.1 | BAT2 | Branched-Chain Amino Acid Transaminase |
| YGL058W | -1 | -1.1 | rad6 | Ubiquitin conjugating (E2) enzyme. The C-terminal 23 residues are critical for sporulation and histone polyubiquitinating activity, but not UV repair or induced mutagenesis. |
| YCR040W | -1 | -1.1 | MATalpha1 | transcripton factor involved in the regulation of the alpha-specific genes |
| YMR021C | -1 | -1.11 | MAC1 | metal-binding transcriptional activator |
| YLR102C | -1 | -1.11 | APC9 | subunit of the anaphase promoting complex (APC) |
| YKL085W | -1 | -1.11 | MDH1 | mitochondrial malate dehydrogenase |
| YJR159W | -1 | -1.11 | SOR1 | sorbitol-induced sorbitol dehydrogenase |
| YJR025C | -1 | -1.11 | BNA1 | 3-hydroxyanthranilic acid dioxygenase |
| YJL089W | -1 | -1.11 | SIP4 | shows homology to DNA binding domain of Gal4p, has a leucine zipper motif and acidic region\; lexA-Sip4p activates transcription |
| YGR143W | -1 | -1.11 | skn1 | encodes a predicted type II membrane protein highly homologous to Kre6p |
| YDR392W | -1 | -1.11 | spt3 | transcription factor, member of the histone acetyltransferase SAGA complex |
| YDR135C | -1 | -1.11 | YCF1 | |
| YDL140C | -1 | -1.11 | rpo21 | RNA polymerase II large subunit |
| YAL001C | -1 | -1.11 | TFC3 | transcription factor tau (TFIIIC) subunit 138 |
| YPR019W | -1 | -1.12 | CDC54 | |
| YPL173W | -1 | -1.12 | MRPL40 | Mitochondrial ribosomal protein MRPL40 (YmL40) |
| YOR344C | -1 | -1.12 | TYE7 | TYE7, a 33 kDa serine-rich protein, is a potential member of the basic region\/helix-loop-helix\/leucine-zipper protein family |
| YOL094C | -1 | -1.12 | RFC4 | Subunit 4 of Replication Factor C\; homologous to human RFC 40 kDa subunit |
| YLR208W | -1 | -1.12 | SEC13 | cytoplasmic protein involved in release of transport vesicles from the ER |
| YLL043W | -1 | -1.12 | FPS1 | glycerol channel protein |
| YKL038W | -1 | -1.12 | RGT1 | transcriptional repressor and activator |
| YGR098C | -1 | -1.12 | esp1 | |
| YDR227W | -1 | -1.12 | sir4 | regulator of silent mating loci |
| YPR025C | -1 | -1.13 | CCL1 | novel cyclin gene\; encodes subunits of TFIIK, a subcomplex of transcription factor TFIIH |
| YPL001W | -1 | -1.13 | HAT1 | histone acetyltransferase |
| YOR003W | -1 | -1.13 | YSP3 | subtilisin-like protease III |
| YMR268C | -1 | -1.13 | PRP24 | U4\/U6 snRNP protein |
| YML069W | -1 | -1.13 | POB3 | binds DNA polymerase delta |
| YGR044C | -1 | -1.13 | rme1 | zinc finger protein\; negative regulator of meiosis\; directly repressed by a1-a2 regulator |
| YDR388W | -1 | -1.13 | rvs167 | (putative) cytoskeletal protein |
| YDR195W | -1 | -1.13 | REF2 | |
| YDR039C | -1 | -1.13 | ENA2 | plasma membrane protein\; putative Na+ pump\; P-type ATPase |
| YDL154W | -1 | -1.13 | MSH5 | MutS homolog involved in chromosome exchange |
| YDL134C | -1 | -1.13 | pph21 | serine-threonine protein phosphatase 2A |
| YCL055W | -1 | -1.13 | KAR4 | transcription factor involved in karyogamy |
| YBL022C | -1 | -1.13 | PIM1 | mitochondrial ATP-dependent protease |
| YOR386W | -1 | -1.14 | phr1 | photolyase |
| YNR055C | -1 | -1.14 | hol1 | Putative ion transporter similar to the major facilitator superfamily of transporters |
| YLL039C | -1 | -1.14 | UBI4 | ubiquitin |
| YGL153W | -1 | -1.14 | PEX14 | |
| YDR189W | -1 | -1.14 | SLY1 | |
| YDR052C | -1 | -1.14 | DBF4 | cyclin-like kinase required for late nuclear division |
| YPR029C | -1 | -1.15 | APL4 | Gamma-adaptin, large subunit of the clathrin-associated protein (AP) complex |
| YPL255W | -1 | -1.15 | BBP1 | |
| YLR158C | -1 | -1.15 | ASP3 | nitrogen catabolite-regulated cell-wall L-asparaginase II |
| YKR097W | -1 | -1.15 | pck1 | phosphoenolpyruvate carboxylkinase |
| YKR002W | -1 | -1.15 | PAP1 | poly(A) polymerase |
| YKL157W | -1 | -1.15 | APE2 | aminopeptidase yscII |
| YJL179W | -1 | -1.15 | PFD1 | Putative homolog of subunit 1 of bovine prefoldin, a chaperone comprised of six subunits |
| YJL165C | -1 | -1.15 | HAL5 | |
| YIR033W | -1 | -1.15 | MGA2 | |
| YER058W | -1 | -1.15 | PET117 | |
| YDR477W | -1 | -1.15 | snf1 | protein serine\/threonine kinase |
| YBR215W | -1 | -1.15 | HPC2 | highly charged, basic protein |
| YBR198C | -1 | -1.15 | TAF90 | |
| YAL043C | -1 | -1.15 | pta1 | |
| YPL177C | -1 | -1.16 | CUP9 | putative DNA binding protein which shows similarity in homeobox domain to human proto-oncogene PBX1 |
| YPL149W | -1 | -1.16 | APG5 | |
| YPL147W | -1 | -1.16 | PXA1 | ABC family long-chain fatty acid transporter |
| YOL068C | -1 | -1.16 | HST1 | |
| YNL121C | -1 | -1.16 | TOM70 | 70 kDa mitochondrial specialized import receptor of the outer membrane |
| YML048W | -1 | -1.16 | GSF2 | |
| YKL093W | -1 | -1.16 | MBR1 | |
| YIR015W | -1 | -1.16 | RPR2 | an integral subunit of RNase P but not RNase MRP |
| YGR241C | -1 | -1.16 | YAP1802 | |
| YGL156W | -1 | -1.16 | ams1 | vacuolar alpha mannosidase |
| YER153C | -1 | -1.16 | pet122 | translational activator of cytochrome c oxidase subunit III |
| YER148W | -1 | -1.16 | spt15 | TATA-binding protein (tfIId) |
| YER105C | -1 | -1.16 | NUP157 | Nucleoporin similar to Nup157p and to mammalian Nup155p |
| YDR311W | -1 | -1.16 | TFB1 | Component of transcription initiation factor IIb, 75 kDa subunit |
| YNL225C | -1 | -1.17 | CNM67 | |
| YNL106C | -1 | -1.17 | INP52 | inositol polyphosphate 5-phosphatase |
| YMR224C | -1 | -1.17 | MRE11 | localizes to discrete sites in rad50s mutants. Mre11p, Rad50p, Mer2p and Xrs2p function in a complex by immunoprecipitation and two-hybrid analyses\; mutations in these genes have similar phenotypes. mRNA is induced in meiosis |
| YMR205C | -1 | -1.17 | pfk2 | phosphofructokinase beta subunit |
| YML010W | -1 | -1.17 | spt5 | transcription factor |
| YKL213C | -1 | -1.17 | DOA1 | |
| YKL127W | -1 | -1.17 | pgm1 | phosphoglucomutase, minor isoform |
| YJR113C | -1 | -1.17 | ||
| YJL013C | -1 | -1.17 | MAD3 | spindle checkpoint complex subunit |
| YJL002C | -1 | -1.17 | OST1 | 64-kDa, alpha subunit of oligosaccharyltransferase complex\; homologous to mammalian ribophorin I |
| YIR008C | -1 | -1.17 | PRI1 | p48 polypeptide of DNA primase |
| YHR071W | -1 | -1.17 | PCL5 | |
| YHR037W | -1 | -1.17 | put2 | delta-1-pyrroline-5-carboxylate dehydrogenase |
| YGR254W | -1 | -1.17 | ENO1 | enolase I |
| YGL095C | -1 | -1.17 | VPS45 | cytosolic and peripheral membrane protein |
| YER109C | -1 | -1.17 | FLO8 | putative transcriptional activator of FLO1 |
| YDR362C | -1 | -1.17 | TFC6 | 91 kDa tau91 subunit of transcription factor IIIC (TFIIIC) |
| YDR125C | -1 | -1.17 | ECM18 | |
| YBR065C | -1 | -1.17 | ECM2 | |
| YAL016W | -1 | -1.17 | tpd3 | protein phosphatase 2A regulatory subunit A |
| YOL103W | -1 | -1.18 | ITR2 | myo-inositol transporter |
| YNL097C | -1 | -1.18 | PHO23 | |
| YMR091C | -1 | -1.18 | NPL6 | |
| YJR035W | -1 | -1.18 | RAD26 | DNA-dependent ATPase, homologous to human Cockayne syndrome B gene ERCC6, that is a putative helicase |
| YJL073W | -1 | -1.18 | JEM1 | |
| YGR037C | -1 | -1.18 | ACB1 | Acyl-CoA-binding protein (ACBP)\/Diazepam binding inhibitor (DBI)\/endozepine (EP) |
| YGL208W | -1 | -1.18 | SIP2 | |
| YGL201C | -1 | -1.18 | MCM6 | |
| YER125W | -1 | -1.18 | RSP5 | Rsp5p encodes a hect (homologous to E6-AP C terminus) and encodes a ubiquitin-protein ligase (E3 enzyme) |
| YER098W | -1 | -1.18 | UBP9 | ubiquitin carboxyl-terminal hydrolase |
| YDR375C | -1 | -1.18 | BCS1 | Mitochondrial ATPase (AAA family) |
| YDR216W | -1 | -1.18 | adr1 | positive transcriptional regulator of ADH2 and peroxisomal protein genes |
| YDL065C | -1 | -1.18 | PEX19 | 40 kDa farnesylated protein associated with peroxisomes |
| YCR089W | -1 | -1.18 | FIG2 | predicted GPI-anchored cell wall protein |
| YBL033C | -1 | -1.18 | rib1 | GTP cyclohydrolase II |
| YBL023C | -1 | -1.18 | mcm2 | |
| YAR044W | -1 | -1.18 | OSH1 | Shows homology to the human oxysterol binding protein (OSBP) |
| YPL152W | -1 | -1.19 | RRD2 | similar to hosphotyrosyl phosphatase activator (PTPA) from several organisms |
| YOR027W | -1 | -1.19 | STI1 | Heat shock protein also induced by canavanine and entry into stationary phase |
| YNL238W | -1 | -1.19 | kex2 | Ca2+-dependent serine protease |
| YMR219W | -1 | -1.19 | ESC1 | |
| YMR164C | -1 | -1.19 | MSS11 | Predicted 758 amino acid polypeptide with poly-glutamine and poly-asparagine domains |
| YMR105C | -1 | -1.19 | pgm2 | Phosphoglucomutase |
| YMR037C | -1 | -1.19 | MSN2 | zinc finger protein |
| YML097C | -1 | -1.19 | VPS9 | |