next up previous
Next: About this document ... Up: Support Vector Machine Classification Previous: Support vector machines

Bibliography

Berg et al., 1984
Berg, C., Christensen, J., and Ressel, P. (1984).
Harmonic Analysis on Semigroups: Theory of Positive Definite and Related Functions.
Springer.

Bishop, 1995
Bishop, C. (1995).
Neural Networks for Pattern Recognition.
Oxford UP.

Breiman et al., 1984
Breiman, L., Friedman, J., Olshen, R., and Stone, C. (1984).
Classification and Regression Trees.
Wadsworth International Group, Belmont, CA.

Burges, 1998
Burges, C. J. C. (1998).
A tutorial on support vector machines for pattern recognition.
Data Mining and Knowledge Discovery, 2(2):121-167.

Campbell and Cristianini, 1999
Campbell, C. and Cristianini, N. (1999).
Simple training algorithms for support vector machines.
Submitted for publication, and available at http://lara.enm.bris.ac.uk/cig.

Chu et al., 1998
Chu, S., DeRisi, J., Eisen, M., Mulholland, J., Botstein, D., Brown, P., and Herskowitz, I. (1998).
The transcriptional program of sporulation in budding yeast.
Science, 282:699-705.

Cortes and Vapnik, 1995
Cortes, C. and Vapnik, V. (1995).
Support-vector networks.
Machine Learning, 20(3):273-297.

DeRisi et al., 1997
DeRisi, J., Iyer, V., and Brown, P. (1997).
Exploring the metabolic and genetic control of gene expression on a genomic scale.
Science, 278:680-686.

Dick et al., 1997
Dick, F. A., Karamanou, S., and Trumpower, B. L. (1997).
QRS1, an essential yeast gene with a genetic relaionship to a subunit of the mitochondrial cytochrome bc1 complex codes for a 60s ribosomal subunit protein.
J Biol Chem, 272(20):13372-13379.

Duda and Hart, 1973
Duda, R. O. and Hart, P. E. (1973).
Pattern Classification and Scene Analysis.
Wiley.

Eisen et al., 1998
Eisen, M., Spellman, P., Brown, P., and Botstein, D. (1998).
Cluster analysis and display of genome-wide expression patterns.
PNAS, 95:14863-14868.

Fujimuro et al., 1998
Fujimuro, M., Tanaka, K., Yokosawa, H., and Toh-e, A. (1998).
Son1p is a component of the 26S proteasome of the yeast Saccharomyces cerevisiae.
FEBS Lett, 423(1):149-154.

Garrett and Grisham, 1995
Garrett and Grisham (1995).
Biochemistry.
Saunders College Pub.

George et al., 1998
George, R., Beddoe, T., Landl, K., and Lithgow, T. (1998).
The yeast nascent polypeptide-associated complex initiates protein targeting to mitochondria in vivo.
PNAS, 95:2296-2301.

Glickman et al., 1998
Glickman, M. H., Rubin, D. M., Fried, V. A., and Finley, D. (1998).
The regulatory particle of the Saccharomyces cerevisiae proteasome.
Mol Cell Biol, 18(6):3149-3162.

Guyon et al., 1996
Guyon, I., Matic, N., and Vapnik, V. (1996).
Discovering informative patterns and data cleaning.
In Fayyad, U., Piatetsky-Shapiro, G., Smyth, P., and Uthurusamy, R., editors, Advances in Knowledge Discovery and Data Mining, pages 181-203. MIT Press.

Jaakkola et al., 1998
Jaakkola, T., Diekhans, M., and Haussler, D. (1998).
A discriminative framework for detecting remote protein homologies.
Available at http://www.cse.ucsc.edu/research/com pbio/research.html.

Jaakkola et al., 1999
Jaakkola, T., Diekhans, M., and Haussler, D. (1999).
Using the Fisher kernel method to detect remote protein homologies.
In ISMB99.

Jaakkola and Haussler, 1998
Jaakkola, T. and Haussler, D. (1998).
Exploiting generative models in discriminative classifiers.
In NIPS 11. Morgan Kauffmann.

Johnson et al., 1995
Johnson, E. S., Ma, P. C., Ota, I. M., and Varshavsky, A. (1995).
A proteolytic pathway that recognizes ubiquitin as a degradation signal.
J Biol Chem, 270(29):17442-17456.

Kinzy and J. L. Woolford, 1995
Kinzy, T. G. and J. L. Woolford, J. (1995).
Increased expression of Saccharomyces cerevisiae translation elongation factor 1 $\alpha $ bypasses the lethality of a TEF5 null allele encoding elongation factor 1 $\beta$.
Genetics, 141(2):481-489.

Kitajima-Ihara and Yagi, 1998
Kitajima-Ihara, T. and Yagi, T. (1998).
Rotenone-insensitive internal NADH-quinone oxidoreductase of Saccharomyces cerevisiae mitochondria: the enzyme expressed in escherichia coli acts as a member of the respiratory chain the host cells.
FEBS Lett, 421(1):37-40.

Lashkari et al., 1997
Lashkari, D. A., L., J., DeRisi, McCusker, J. H., Namath, A. F., Gentile, C., Hwang, S. Y., Brown, P. O., and Davis, R. W. (1997).
Yeast microarrays for genome wide parallel genetic and gene expression analysis.
PNAS, 94:13057-13062.

Mannhaupt, 1999
Mannhaupt, G. (1999).
Personal communication.
Max-Planck-Institut fuer Biochemie.

Marres et al., 1991
Marres, C. A. M., de Vries, S., and Grivell, L. A. (1991).
Isolation and incativation of the nuclear gene encoding the rotenone-insensitive internal NADH:ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae.
Eur J Biochem, 195(1):857-862.

Papa et al., 1999
Papa, F. R., Alexander, Y. A., and Hochstrasser, M. (1999).
Interaction of the Doa4 deubiquitinating enzyme with the yeast 26S proteasome.
Mol Biol Cell, 10(1):741-756.

Platt, 1999
Platt, J. C. (1999).
Fast training of support vector machines using sequential minimal optimization.
In Schölkopf, B., Burges, C. J. C., and Smola, A. J., editors, Advances in Kernel Methods. MIT Press.

Quinlan, 1997
Quinlan, J. (1997).
C4.5.
In Programs for Machine Learning, Series in Machine Learning. Morgan Kaufmann.

Schölkopf et al., 1997
Schölkopf, B., Sung, K., Burges, C., Girosi, F., Niyogi, P., Poggio, T., and Vapnik, V. (1997).
Comparing support vector machines with Gaussian kernels to radial basis function classifiers.
IEEE Trans Sig Proc, 45(11):2758-2765.

Scholkopf et al., 1999
Scholkopf, C., Burges, J. C., and Smola, A. J. (1999).
Advances in Kernel Methods.
MIT Press.

Shawe-Taylor and Cristianini, 1999
Shawe-Taylor, J. and Cristianini, N. (1999).
Further results on the margin distribution.
In Proceedings of COLT99.

Spellman et al., 1998a
Spellman, P., Sherlock, G., Zhang, M., Iyer, V., Anders, K., Eisen, M., Brown, P., Botstein, D., and Futcher, B. (1998a).
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
Mol Biol Cell, 9:3273-3297.

Spellman et al., 1998b
Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown, P. O., Botstein, D., and Futcher, B. (1998b).
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
Mol Biol Cell, 9:3273-3297.

Stoler et al., 1995
Stoler, S., Keith, K. C., Curnick, K. E., and Fitzgerald-Hayes, M. (1995).
A mutation in CSE4, an essential gene encoding a novel chromatin-associated protein in yeast, causes chromosome nondisjunction and cell cycle arrest at mitosis.
Genes Dev, 9(5):573-586.

Tamayo et al., 1999
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E., and Golub, T. (1999).
Interpreting patterns of gene expression with self-organizing maps.
PNAS, 96:2907-2912.

Vapnik, 1998
Vapnik, V. (1998).
Statistical Learning Theory.
Wiley.

Veropulos et al., 1999
Veropulos, K., Campbell, C., and Cristianini, N. (1999).
Controlling the sensitivity of support vector machines.
In Proceedings of the Sixteenth International Joint Conference on Artificial Intelligence (IJCAI99), Stockholm, Sweden.

Wool et al., 1995
Wool, I. G., Chan, Y.-L., and Gluck, A. (1995).
Structure and evolution of mammalian ribosomal proteins.
Biochem Cell Biol, 73:933-947.

Wu et al., 1999
Wu, D., Bennett, K., Cristianini, N., and Shawe-Taylor, J. (1999).
Large margin decision trees for induction and transduction.
In ICML99.



Michael Brown
1999-11-05