Bioinformatics class schedule, 2004-2005

Karplus' selection of useful WWW pointers

UCSC Science and Engineering Library—bioinformatics page

ISMB99 tutorial on using hidden Markov models

SAM hidden Markov modeling (HMM) suite

UCSC Kestrel parallel processor

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UCSC Genome Browser

HMM applications, such as sequence query against a database or model library

SAM-T06 protein structure prediction system, based on hidden Markov models

Human gene prediction with the UCSC/LBL Genie project

E. coli gene prediction with EcoParse hidden Markov models

Small subunit ribosomal RNA secondary structure prediction with RNACAD, a stochastic context-free grammar modeling system

G-protein coupled receptor classification, a GPCR subfamily classifier that uses HMMs and support vector machines

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The Intronerator, for cDNA alignments, gene predictions, sequence data, and literature links in C. elegans

Support vector machine classification of microarray gene expression data, a link to the SVM technical report and results

Ares lab intron site, a searchable database of spliceosomal class of introns in Saccharomyces cerevisiae (yeast)

gen sequence, a program for generating random sequences of amino acids with lengths and compositions typical of those found in real protein databases—also includes random number generators for normal, beta, Dirichlet, and mixture of Dirichlet distributions

Index of yeast-protein predictions

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Post-CASP bioinformatics workshops, held in December 2000, December 2002, and December 2006

Articles about UCSC bioinformatics

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