Index of class resources

Handouts

homework problem sets, homework solutions, other helpful handouts

Project list

A project is required---this list gives some ideas. The projects students actually chose are listed here.

General Class Information

class and section times, instructor and TA information

Old class web pages:

• Winter 2001 class web page
• Fall 1999 class web page
• Fall 1998 class web page
• Winter 1998 class web page
• Fall 1996 class web page

http://library.ucsc.edu/~hightower/bioinformatics.html

Christy Hightower's webography for bioinformatics---intended as a tool for librarians and undergraduates, but rich enough to be quite useful for grad students also.

WWW resources for biosequence analysis

URLs for web sites containing biosequence analysis tools, but not well annotated. This is my personal list of interesting sites, but it needs some updating, organzing, and annotating.

International Society for Computational Biology

ISCB is the primary professional organiszation for bioinformatics, sponsoring (or co-sponsoring) several conferences and having Bioinformatics as its official journal. Membership pays off in reduced conference fees and journal subscriptions.

Class notes and www pages for other bionformatics classes (maintained by ISCB)

List of on-line text resources for biosequence analysis

See also the ISCB list.

• Class description (catalog copy)
• Intake survey---you must fill this out to get a permission code.
• Topics (by week)
• Class prerequisites and evaluation weights
• text and reserve books for class
• homework assignments
  1. Dynamic programming Due Monday 11 Feb 2002.
  2. Dirichlet mixtures Due Monday 27 Feb 2002.
  3. Internet resources (optional) Due Wed March 13 2002.
• Lydia Gregoret's guest lecture from Fall '96
• Bill Scott's x-ray crystallography lectures

Class newsgroup:

ucsc.class.cmp243

Lecture times:

MWF 11-12:10, Oakes Acad 222

Instructor:

Kevin Karplus (karplus@soe.ucsc.edu)

Phone: 1-831-459-4250

Office: 315B Applied Sciences

Office hours: Th 2-3

I will have one open office hour each week, plus a regularly scheduled meeting with each enrolled student for 30 minutes a week (mainly to discuss the project, but homework, research, and other topics are also expected).

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SoE home

Kevin Karplus's home page

Biomolecular Engineering Department

Karplus's lab page

UCSC Bioinformatics research

Questions about page content should be directed to

Kevin Karplus
Biomolecular Engineering
University of California, Santa Cruz
Santa Cruz, CA 95064
USA
karplus@soe.ucsc.edu
1-831-459-4250
318 Physical Sciences Building