Index of class resources

Handouts

homework problem sets, homework solutions, other helpful handouts

Project list

A project is required---this list gives some ideas.

General Class Information

class and section times, instructor and TA information

Old class web pages:

• Fall 1999 class web page
• Fall 1998 class web page
• Winter 1998 class web page
• Fall 1996 class web page

WWW resources for biosequence analysis

URLs for web sites containing biosequence analysis tools, but not well annotated. This is my personal list of interesting sites, but it needs some updating, organzing, and annotating.

International Society for Computational Biology

ISCB is the primary professional organiszation for bioinformatics, sponsoring (or co-sponsoring) several conferences and having Bioinformatics as its official journal. Membership pays off in reduced conference fees and journal subscriptions.

Class notes and www pages for other bionformatics classes (maintained by ISCB)

List of on-line text resources for biosequence analysis

See also the ISCB list.

• Class description (catalog copy)
• Topics (by week)
• Class prerequisites and evaluation weights
• text and reserve books for class
• homework assignments Not available yet
  1. Homework 1 due Fri Jan 19
  2. Homework 2 due Fri Feb 9
  3. Homework 3 due Fri Mar 2
  4. Homework 4 due ??
  5. The projects will be due Friday March 16 at 4 p.m. There will be a poster session 4-7 p.m.
• Lydia Gregoret's guest lecture from Fall '96

Class newsgroup:

ucsc.class.cmp243

Lecture times:

MWF 12:30-1:40 Earth and Marine Sciences B214

Instructor:

Kevin Karplus (karplus@cse.ucsc.edu)

Phone: 1-831-459-4250

Office: 315B Applied Sciences

Office hours: Thurs 2-3

I will have one open office hour each week, plus a regularly scheduled meeting with each student for 15-30 minutes a week (mainly to discuss the project, but homework, research, and other topics are also expected).

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SoE home

Kevin Karplus's home page

Biomolecular Engineering Department

Karplus's lab page

UCSC Bioinformatics research

Questions about page content should be directed to

Kevin Karplus
Biomolecular Engineering
University of California, Santa Cruz
Santa Cruz, CA 95064
USA
karplus@soe.ucsc.edu
1-831-459-4250
318 Physical Sciences Building